View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_high_17 (Length: 273)
Name: NF7134_high_17
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 32845196 - 32845449
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
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| T |
32845196 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggtctattacac |
32845295 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845296 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
32845395 |
T |
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| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatgtagtgtcatcaaag |
254 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845396 |
cataccatagcgatgaagaagattggtttccaaacctatgtagtgtcatcaaag |
32845449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 32831915 - 32832168
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32831915 |
acaagtgtaaaattatcaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggtctattacac |
32832014 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
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| T |
32832015 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
32832114 |
T |
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| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatgtagtgtcatcaaag |
254 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832115 |
cataccatagcgatgaagaagattggtttccaaacctatgtagtgtcatcaaag |
32832168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 17932728 - 17932475
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
17932728 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggactattacac |
17932629 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17932628 |
ttcaaaaatacactgcaacacttaaacccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
17932529 |
T |
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| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatgtagtgtcatcaaag |
254 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17932528 |
cataccatagagatgaagaagattggtttccaaacctatgtagtgtcatcaaag |
17932475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 46189227 - 46189003
Alignment:
| Q |
30 |
atattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacacttcaaaactacactgcaacacttagtccc |
129 |
Q |
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|||||||||||||||| ||||| ||| |||||||||||||| |||||| |||| | |||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
46189227 |
atattgggtattgatgaatgcaatcaccccatggtcccttatgagactcaccaagtattggtctattacacttcaaaacaacactgcaacacttggtccc |
46189128 |
T |
|
| Q |
130 |
acttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagttcatacaatagtgatgaagaagattggttt |
229 |
Q |
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|||||| ||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||| |
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| T |
46189127 |
acttcccattccaacttgccaaacattatcacctttcttcactttttccttggcttccaagtaagcaagttcataccacaatgatgaagaagattgattt |
46189028 |
T |
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| Q |
230 |
ccaaacctatgtagtgtcatcaaag |
254 |
Q |
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||||||||||| ||||||||||||| |
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| T |
46189027 |
ccaaacctatgaagtgtcatcaaag |
46189003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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