View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7134_high_21 (Length: 249)

Name: NF7134_high_21
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7134_high_21
NF7134_high_21
[»] chr2 (2 HSPs)
chr2 (1-231)||(33860097-33860327)
chr2 (41-149)||(16231484-16231592)
[»] chr1 (9 HSPs)
chr1 (40-205)||(43067524-43067689)
chr1 (40-224)||(38138654-38138838)
chr1 (22-205)||(43044284-43044467)
chr1 (40-231)||(45984480-45984671)
chr1 (40-205)||(43083146-43083311)
chr1 (40-199)||(50911743-50911902)
chr1 (22-201)||(3300018-3300197)
chr1 (40-194)||(7891776-7891930)
chr1 (28-179)||(43077427-43077578)
[»] chr4 (2 HSPs)
chr4 (41-211)||(19965332-19965504)
chr4 (47-205)||(4230774-4230932)
[»] chr8 (3 HSPs)
chr8 (41-225)||(4618992-4619176)
chr8 (78-205)||(4788273-4788400)
chr8 (78-151)||(4296780-4296853)
[»] chr5 (1 HSPs)
chr5 (47-227)||(16348456-16348636)
[»] chr6 (2 HSPs)
chr6 (22-205)||(7530072-7530255)
chr6 (22-205)||(7520535-7520718)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 33860097 - 33860327
Alignment:
Q  1 catcaatgctgactcagtgatcttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33860097 catcaatgctgactcagtgatcttcctctccacagacgcgatgacgccaaaagccacagtttgacgcctgtctctcgcaacaaaacggccgagtggagga 33860196  T
Q  101 taataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33860197 taataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcct 33860296  T
Q  201 taccataaaaccagtcaaccttggcaataag 231  Q
    |||||||||||||||||||||||||||||||    
T  33860297 taccataaaaccagtcaaccttggcaataag 33860327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 16231484 - 16231592
Alignment:
Q  41 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 140  Q
    ||||| |||| |||||||||||||||| |||||||  || ||||||| || || | |||||| | |  || | |||| ||||||||||||||  | ||||    
T  16231484 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 16231583  T
Q  141 tcatcttaa 149  Q
    |||||||||    
T  16231584 tcatcttaa 16231592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 43067689 - 43067524
Alignment:
Q  40 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 139  Q
    ||||||||||| |||||||||||||||| |||||||  || |||||||||||||||||||||| | || ||||  ||| |||||||| ||||||||||||    
T  43067689 gatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtggga 43067590  T
Q  140 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 205  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43067589 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43067524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 38138838 - 38138654
Alignment:
Q  40 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 139  Q
    |||||| |||| |||||||||||||||| |||||||  || |||||||||| ||||||||||||  ||  ||||||||||||||||| | ||||||||||    
T  38138838 gatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtggga 38138739  T
Q  140 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtcaaccttgg 224  Q
    |||||||||| | || ||||||||||| ||||||||||||  ||||||||||| ||||||  |||| |||||| ||||| |||||    
T  38138738 atcatcttaacaacaccagcatcaccattcttcaagaatttgggctccttctcgatttccaaaccagaaaacctgtcaaacttgg 38138654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 43044284 - 43044467
Alignment:
Q  22 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 121  Q
    |||| ||||||||| |  |||||| |||| |||||||||||||||| |||||||  || |||||||||||||||||||||| | || ||||  ||| |||    
T  43044284 cttcttctccacagccttgatgaccccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaacc 43044383  T
Q  122 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 205  Q
    ||||| ||||||||||||||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43044384 accatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 45984671 - 45984480
Alignment:
Q  40 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 139  Q
    |||||| |||| ||||||||||||| ||  ||||||  |||||||||||||||||||||||||   || ||||  |||||||||||||||||||||||||    
T  45984671 gatgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggctctaccaccataggcttggtggga 45984572  T
Q  140 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtcaaccttggcaataag 231  Q
    ||||||||||||  | ||| |||||||||| |||| ||||  |||||| |||||||||||| |||| || ||| ||||||||||| ||||||    
T  45984571 atcatcttaataataccagtatcaccactcatcaaaaatttgggctccctctcaatttcctcaccagaacacctgtcaaccttggaaataag 45984480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 43083146 - 43083311
Alignment:
Q  40 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 139  Q
    ||||||||||| |||||||||||||||| |||||||  || ||||||| |||||||||||||| | || ||||  ||| |||||||| ||||||||||||    
T  43083146 gatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtggga 43083245  T
Q  140 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 205  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43083246 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43083311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 50911743 - 50911902
Alignment:
Q  40 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 139  Q
    |||||| |||| |||||||||||||||| |||||||  || ||||||||||||||| |||| | |  |  |||  |||||||| ||| ||||||||||||    
T  50911743 gatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtggga 50911842  T
Q  140 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcc 199  Q
    ||||||| |||| || |||| |||||| ||||||||||||  ||||||||||||||||||    
T  50911843 atcatctcaataacaccagcgtcaccattcttcaagaatttgggctccttctcaatttcc 50911902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 3300018 - 3300197
Alignment:
Q  22 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 121  Q
    |||| ||||||||| |  |||||| |||| ||||||||| |||||| | || ||  || | |||||||| ||||||||||| | || ||||  ||| |||    
T  3300018 cttcttctccacagccttgatgacaccaacagccacagtctgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaacc 3300117  T
Q  122 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcctt 201  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||  ||||||||||||  |||||||||||||| |||||    
T  3300118 accatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctt 3300197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 7891930 - 7891776
Alignment:
Q  40 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 139  Q
    |||||| |||| |||||||||||||||| |||||||  || ||||||| || |||| ||||||   ||  |||  |||||||||||| ||||||||||||    
T  7891930 gatgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagtctctaccaccatgggcttggtggga 7891831  T
Q  140 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaa 194  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||    
T  7891830 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaa 7891776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 43077578 - 43077427
Alignment:
Q  28 ctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccata 127  Q
    |||||||| || |||||| |||| ||||||||||||||||||||| ||   |  ||||||||| ||||||||||| | || ||||  ||| ||||||||     
T  43077578 ctccacagccgtgatgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaagtctcaaccaccatg 43077479  T
Q  128 ggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaatt 179  Q
    ||||||||||||||||||||||||  | ||||||||||| || ||| |||||    
T  43077478 ggcttggtgggaatcatcttaataataccagcatcaccattcatcaggaatt 43077427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 19965504 - 19965332
Alignment:
Q  41 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 140  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| | || |||| ||||||||||||||||||||| |||||    
T  19965504 atgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaa 19965405  T
Q  141 tcatcttaatagcagcagcat--caccactcttcaagaattcaggctccttctcaatttccttaccataaaac 211  Q
    ||||||||| | |||||||||  ||||| || |||||||| | |||  |||  |||||||||||||| |||||    
T  19965404 tcatcttaacaacagcagcatcacaccattcatcaagaatccgggcatctttgcaatttccttaccagaaaac 19965332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 4230774 - 4230932
Alignment:
Q  47 ccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatct 146  Q
    |||| |||||||||||| ||| | |||||  || |||||||||| ||||||||||| | || ||||  ||| |||||||| |||||||||||||||||||    
T  4230774 ccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatct 4230873  T
Q  147 taatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 205  Q
    |||||  | ||||||| ||| |||||| ||||| |||||||||||| || |||||||||    
T  4230874 taataataccagcatctccattcttcaggaatttaggctccttctcgatctccttacca 4230932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 225
Target Start/End: Original strand, 4618992 - 4619176
Alignment:
Q  41 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 140  Q
    ||||| |||| |||||| ||| ||||  |||||||  || ||||||||||||||| |||||||| ||  |||  |||||||||||| |||||||||||||    
T  4618992 atgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 4619091  T
Q  141 tcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtcaaccttggc 225  Q
    |||||||||||    ||||||||||| |||||| |||||  ||||| ||||||||| |||||||| || ||| ||||| ||||||    
T  4619092 tcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggc 4619176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 4788400 - 4788273
Alignment:
Q  78 caacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaa 177  Q
    |||||||| |||| |||||||||||   |  ||||  |||||||||||||||||||||||||| ||||| ||||  | || |||||||| ||||||||||    
T  4788400 caacaaaatggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaaccatctcaataagaccatcatcaccattcttcaagaa 4788301  T
Q  178 ttcaggctccttctcaatttccttacca 205  Q
    | |||||  || ||||||| ||| ||||    
T  4788300 tgcaggcctctcctcaattacctaacca 4788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 4296780 - 4296853
Alignment:
Q  78 caacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaata 151  Q
    |||||||||||| |||||||||| |   || ||||  |||||||||||||| || |||||||||||||||||||    
T  4296780 caacaaaacggctgagtggaggagatagagagaaaggctctaccaccatagactcggtgggaatcatcttaata 4296853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 227
Target Start/End: Original strand, 16348456 - 16348636
Alignment:
Q  47 ccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatct 146  Q
    |||| ||||||||||||| || | |||||  ||| |||||||||||||| |||||| | ||  |||  |||||||||||| |||||||||||||||||||    
T  16348456 ccaatagccacagtttgatgcgtatctctgacaataaaacggccgagtgaaggatattcagaaaaagtctctaccaccatgggcttggtgggaatcatct 16348555  T
Q  147 taatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtcaaccttggcaa 227  Q
     ||||    || |||||||  ||||||||||||  ||||||||| |||||  ||| ||| |||||| ||| ||||||||||    
T  16348556 gaataatgccaccatcacctttcttcaagaatttgggctccttcacaattatcttgccagaaaacctgtctaccttggcaa 16348636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 7530255 - 7530072
Alignment:
Q  22 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 121  Q
    |||| ||||||||| |  |||||| |||| ||| |||||||||||| |||| ||  || ||||||| || || |||||||| | ||| ||   ||| |||    
T  7530255 cttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtctcaacc 7530156  T
Q  122 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 205  Q
    ||||| ||||||||||||| |||||||||   | ||||||||||| |||||||||| |  |||||||||||||| |||||||||    
T  7530155 accatgggcttggtgggaaccatcttaatgataccagcatcaccattcttcaagaacttgggctccttctcaatctccttacca 7530072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 7520718 - 7520535
Alignment:
Q  22 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 121  Q
    |||| ||||||||| |  |||||| |||| ||| |||||||||||| |||| ||  |  ||||||| || || |||||||| | ||||||   ||| |||    
T  7520718 cttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagcgaaggtctcaacc 7520619  T
Q  122 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 205  Q
    ||||| ||||||||||||| |||||||||   | ||||||||||  |||||||||| |  |||||||||||||| |||||||||    
T  7520618 accatgggcttggtgggaaccatcttaatgataccagcatcaccgttcttcaagaacttgggctccttctcaatctccttacca 7520535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University