View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_high_6 (Length: 438)
Name: NF7134_high_6
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 48949531 - 48949969
Alignment:
| Q |
1 |
ctaggcactacactgacttcccaagtcacatgccaaactgagaaggaaattacatgcttattgagtataattaaacttgtttccactgtcatcaaactaa |
100 |
Q |
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| T |
48949531 |
ctaggcactacactgacttcccaagccacatgccaaactgagaaggaaattacatgcttattgagtataattaaacttgtttccactgttatcaaactaa |
48949630 |
T |
|
| Q |
101 |
aacaacattacatgtttgatgagcaataacctgtaaaaacaaatgaaacttattcgtaaacaaaatgtttttctttgaaaatttaatgaaagggatgtac |
200 |
Q |
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| T |
48949631 |
aacaacattacatgtttgatgagcaataacctgtaaaaacaaatgaaacttattcgtaaacaaaatgtttttctttgaaaatttaatgaaagggatgtac |
48949730 |
T |
|
| Q |
201 |
tatattaaggaaaacttctcctaagtaaatatccatggcatgatggcatgatgtttttcattaaatgcttgaataattaattgaaagacaaacaataaat |
300 |
Q |
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| T |
48949731 |
tatattaaggaaaacttctcctaagtaaatatccatggcatgatggcatgatgtttttcattaaatgcttgaataattaattgaaagacaaacaataaat |
48949830 |
T |
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| Q |
301 |
acgaagggaaatccacagatcttaccttcgcagacaatttatatgcatatgtaggaattgcaaaaattatgaattaagatttccattcctgaatcat--- |
397 |
Q |
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| T |
48949831 |
acgaagggaaatccacagatcttaccttcgcagacaatttatatgcatatataggaattgcaaaaattatgaa-taagatttccattcctgaatcatttt |
48949929 |
T |
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| Q |
398 |
----gcctgctatacaaactaataggacgttcatctcact |
433 |
Q |
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| T |
48949930 |
gacagcctgctatacaaactaataggacgttcatttcact |
48949969 |
T |
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