View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_high_9 (Length: 407)
Name: NF7134_high_9
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 194 - 402
Target Start/End: Complemental strand, 31257048 - 31256850
Alignment:
| Q |
194 |
tggctataaatataaaaagaaatatcaaatgtattctgtttgaaattcgatctaaatatatttgactatttacaatgacctatgattttaagtgtgctgg |
293 |
Q |
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| T |
31257048 |
tggctataaatataaaaagaaatatcaaatgtattttgtttgaaattcggtctaaatatatttgactatttacaatgacctatgattttaagtgtgttgg |
31256949 |
T |
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| Q |
294 |
-tcaatttcacaaaattttgaatccacattcattacacactgatgtatgtgataggtattgaacatgtgaattcaacgccccaaagttttgaactcacat |
392 |
Q |
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| T |
31256948 |
ttcaatttcacaaaattttgaatccacatccattacacactgatgtatgtgataggtattgaac-----------acgccacaaagttttgaactcacat |
31256860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 31257212 - 31257041
Alignment:
| Q |
1 |
tcgatttgcatattcatctcactgaaaaatatgtaaccgttttaaaacgtattcacaaacaaataatacttcnnnnnnnttcaatagtataggctaagca |
100 |
Q |
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| T |
31257212 |
tcgatttgcacattcatctcactgaaaaatatataaccgttttaaaacgtattcacaaacaaataatacttgaaaaaaattcaatagtataggctaagca |
31257113 |
T |
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| Q |
101 |
tgactattactattttaccaatttctaaaatattaaaagtttaaataagaattcatactatctttggctata |
172 |
Q |
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| T |
31257112 |
tgactattactattttaccaatttctaaaatattaaaagtttaaataagaattcatactatatttggctata |
31257041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 31257421 - 31257371
Alignment:
| Q |
294 |
tcaatttcacaaaattttgaatccacattcattacacactgatgtatgtga |
344 |
Q |
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| T |
31257421 |
tcaatttcacaaaattttgaacccagattcattacacaatgacatatgtga |
31257371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 31256781 - 31256736
Alignment:
| Q |
92 |
ggctaagcatgactattactattttaccaatttctaaaatattaaa |
137 |
Q |
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| T |
31256781 |
ggctaaacatgactactaatattttaccaatttctaaaatactaaa |
31256736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 31256679 - 31256620
Alignment:
| Q |
217 |
atcaaatgtattctgtttgaaattcgatctaaatatatttgactatttacaatgacctatg |
277 |
Q |
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| T |
31256679 |
atcaaatgtatttagttt-aaattcggactaaatatatttgactatttacggtgacctatg |
31256620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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