View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_low_1 (Length: 657)
Name: NF7134_low_1
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 8925023 - 8925197
Alignment:
| Q |
5 |
atgtgtttgagtaatatttgatccgacatttgtttcaattgaagttatttagaagcaattttaaaattgaaattagtcgaagtaagcaacatttttcaat |
104 |
Q |
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| T |
8925023 |
atgtgtttgagcaatatttgatacgacatttgtttcaattgaagttatttagaagcaattttaaaattgaaattagtcgaagtaagcaacatttttcaat |
8925122 |
T |
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| Q |
105 |
gaaaatttgtgttgggtctgcggtaattacagtgtaaacaattagtttttctaatacttgaaaacttgtattcaa |
179 |
Q |
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| T |
8925123 |
gaaaatttgtgttgggtctgcggtaattacagtgtaaaaaattagtttttctaatacttgaaaacttgtgttcaa |
8925197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 506 - 640
Target Start/End: Original strand, 8925484 - 8925618
Alignment:
| Q |
506 |
ttcagtaacaacgatgtagtgaaaattaaaaagtcacaattattaggtattcaaaccagaaaaaagttcacaagatcaataaggagaggctttttaaacc |
605 |
Q |
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| T |
8925484 |
ttcagtagcaacgatgtagtgaaaattaaaaagttaaaattatttggtattcagaccagaagaaagttcacaagatcaataaggagaggctttttaaacc |
8925583 |
T |
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| Q |
606 |
taagaaagaaggtggagtggagttggatttaaatt |
640 |
Q |
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| T |
8925584 |
taagaaagaaggtggagtggagttggatttaaatt |
8925618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 8925198 - 8925329
Alignment:
| Q |
154 |
tctaatacttgaaaacttgtattcaaattattcctttgtaaacaacnnnnnnnnnagtgaaacttcaaattggtctaagtaggattgtttgagcgttgaa |
253 |
Q |
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| T |
8925198 |
tctaatacttgaaaacttgtattcaaattattcctttgtaaacaactttttttt-agtgaaacttcaaattggtctaagtaggattgtttgagcgttgaa |
8925296 |
T |
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| Q |
254 |
agaggatggagggaaatacattttactaataat |
286 |
Q |
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| T |
8925297 |
agaggatggagggaaagacattttactaataat |
8925329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 8925418 - 8925467
Alignment:
| Q |
380 |
aactacaagccttggtttcataggattagaggatcttaaatcgtgggaga |
429 |
Q |
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| T |
8925418 |
aactacaacccttggtttcacaggattagaagatcttaaatcgttggaga |
8925467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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