View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7134_low_12 (Length: 350)
Name: NF7134_low_12
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 47819597 - 47819862
Alignment:
| Q |
65 |
tttaaaatattgataaaattggagagtaatttaagaatgacttacaaaataggaaccatcttgttggtttannnnnnnnnnnactttattttaaagttcc |
164 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47819597 |
tttaaaatattgataaaattggagattaatttaagaatgatttacaaaataggaaccatcttgttggtttatttttttgt--actttattttaaagttcc |
47819694 |
T |
|
| Q |
165 |
aatatcttttcattcaaaatagaaatataagtaacaatgtaataagttgacatagtgttaggacttaatctctcataaagagagaacttttaga-nnnnn |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47819695 |
aatatcttttcattcaaaatagaaatataagtaacaatgtaataaattgacatagtgttaggacttaatctcttataaagagagaacttttagatttttt |
47819794 |
T |
|
| Q |
264 |
nnnnnnnnncagggaagagaacttttagatttaatatattatgtgacggaacttcatgacttaactaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47819795 |
tttttttttgagggaagagaacttttagatttaatatattatgtgacggaacttcatgacttaactaa |
47819862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 47819162 - 47819231
Alignment:
| Q |
4 |
atgtcgaagaatataaatacaacgacctaatttgaaagtgtttgataaagacagaggctaatttaaaata |
73 |
Q |
| |
|
||||| || |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47819162 |
atgtcaaataatataaacacaacgacctaatttaaaagtgtttgagaaagacagaggctaatttaaaata |
47819231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 6219697 - 6219633
Alignment:
| Q |
44 |
tttgataaagacagaggctaatttaaaatattgataaaattggagagtaatttaagaatgactta |
108 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| ||||||| ||| || ||||||||||||||| |
|
|
| T |
6219697 |
tttgacaaagacagtgactaatttaaaatattaataaaatcatagactagtttaagaatgactta |
6219633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 31066089 - 31066157
Alignment:
| Q |
44 |
tttgataaagacagaggctaatttaaaatattgataaaattggagagtaatttaagaatgacttacaaa |
112 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||| | | || | |||||||||||| ||||||||| |
|
|
| T |
31066089 |
tttgataaagacagagactattttaaaatattaatagagtcgggggctaatttaagaatcacttacaaa |
31066157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University