View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7134_low_14 (Length: 321)
Name: NF7134_low_14
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_14 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0164 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 28733333 - 28733052
Alignment:
| Q |
1 |
ttataggaaacatggatttcctccacattttggtaaaaattatgctatcgctataacaactcttctcttgagttgaatgaagaaagggaggatttggaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28733333 |
ttataggaaacatggatttcctccacattttggtaaaaattatgctatcgctataacaactcttctcttgagttgaatgaagaaagggaggatttggaag |
28733234 |
T |
|
| Q |
101 |
attcaaagagttcaaaggcaatgattcttttggattcaccaaggagcaatatgaacaacttgtcaacttggttcagactcagtaaggttcctctcgcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28733233 |
attcaaagagttcaaaggcaatgattcttttggattcaccaaggagcaatatgaacaacttgtcaacttggttcagactcagtaaggttcctctcgcaag |
28733134 |
T |
|
| Q |
201 |
gtgaatcatgtcacaaatcatgcgactttagttatatccagagtatcttactctttgaatcactcaaatattggatcctata |
282 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28733133 |
gtgaatcatgtcacaaatcatgtgactttagttatatccagagtatcttactctttgaatcactcaaatattggatcctata |
28733052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 13429970 - 13429745
Alignment:
| Q |
2 |
tataggaaacatggatttcctccacattttggtaaaaattatgctatcgctataacaactcttctcttgagttgaatgaagaaagggaggatttggaaga |
101 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||| |||||| || ||||||||| |||||||| || ||||||||||||||||| |||| || |
|
|
| T |
13429970 |
tatagaaaacatggatttcccccacattttggtaaaaattctgctatggc--taacaactcctctcttgaagtgcatgaagaaagggaggatatggatga |
13429873 |
T |
|
| Q |
102 |
ttcaaagagtt-caaaggcaatgattcttttggattcaccaaggagcaatatgaacaacttgtcaacttggttcagactcagtaaggttcctctcgcaag |
200 |
Q |
| |
|
||||||||||| | | | |||||||| ||||| ||||||||||| |||||||| ||||||||||| || | ||||||| ||||||||||| ||||| |
|
|
| T |
13429872 |
ttcaaagagttgtagatggaatgattcctttggtttcaccaaggaacaatatgatcaacttgtcaatatgctacagactcgacaaggttcctctagcaag |
13429773 |
T |
|
| Q |
201 |
gtgaatcatgtcacaaatcatgcgactt |
228 |
Q |
| |
|
||||||||||||| |||||||| ||||| |
|
|
| T |
13429772 |
gtgaatcatgtcataaatcatgtgactt |
13429745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 6755026 - 6754945
Alignment:
| Q |
74 |
tgaatgaagaaagggaggatttggaagattcaaagagtt-caaaggcaatgattcttttggattcaccaaggagcaatatga |
154 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||| | |||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
6755026 |
tgaatgaagaaaaggaggatatggatgattcaaagagctgcaaaggcactgattaatatggattcaccaaggagcaatatga |
6754945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 49642220 - 49642184
Alignment:
| Q |
76 |
aatgaagaaagggaggatttggaagattcaaagagtt |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49642220 |
aatgaagaaagggaggatttggatgattcaaagagtt |
49642184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 6754909 - 6754843
Alignment:
| Q |
211 |
tcacaaatcatgcgactttagttatatccagagtatcttactctttgaatcactcaaatattggatc |
277 |
Q |
| |
|
||||||| |||| |||| || |||||| |||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
6754909 |
tcacaaagcatgtcacttcaggtatatctagagtatcttaccctttgaatcattcatatattggatc |
6754843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 49642158 - 49642120
Alignment:
| Q |
125 |
ttcttttggattcaccaaggagcaatatgaacaacttgt |
163 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
49642158 |
ttcttttggaatcaccaaggaacaatatgaacaacttgt |
49642120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31196379 - 31196141
Alignment:
| Q |
1 |
ttataggaaacatggatttcctccacattttggtaaaaattatgctatcgctataacaactcttctcttgagttgaatgaagaaagggaggatttggaag |
100 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| |||||| |||| ||||| |||| |||| || || |||||| || ||||||||||||||||| | || | |
|
|
| T |
31196379 |
ttataagaaacatggttttcctccaaattatggtaagaattttgctactgcta--acaattcctcccttgagatgcatgaagaaagggaggatcttgatg |
31196282 |
T |
|
| Q |
101 |
attcaaagag-ttcaaaggcaatgattcttttggattcaccaaggagcaatatgaacaacttgtcaacttggttcagactcagtaaggttcctctcgcaa |
199 |
Q |
| |
|
||||||| || | |||||| | |||||||||| | | || || |||||||||||||| ||||| || | |||| ||||| || |||| ||| |||| |
|
|
| T |
31196281 |
attcaaaaagctgcaaaggaagtgattcttttagcatgacaaaagagcaatatgaacatcttgttaatcttcttcaaactcaacaaagttcttctagcaa |
31196182 |
T |
|
| Q |
200 |
ggtgaatcatgtcacaaatcatgcgactttagttatatcca |
240 |
Q |
| |
|
|||||| |||||||| ||||||| ||| | || |||||||| |
|
|
| T |
31196181 |
ggtgaaccatgtcactaatcatgtgacatcaggtatatcca |
31196141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 52771934 - 52772172
Alignment:
| Q |
1 |
ttataggaaacatggatttcctccacattttggtaaaaattatgctatcgctataacaactcttctcttgagttgaatgaagaaagggaggatttggaag |
100 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| |||||| |||| ||||| |||| |||| || || |||||| || ||||||||||||||||| | || | |
|
|
| T |
52771934 |
ttataagaaacatggttttcctccaaattatggtaagaattttgctactgcta--acaattcctcccttgagatgcatgaagaaagggaggatcttgatg |
52772031 |
T |
|
| Q |
101 |
attcaaagag-ttcaaaggcaatgattcttttggattcaccaaggagcaatatgaacaacttgtcaacttggttcagactcagtaaggttcctctcgcaa |
199 |
Q |
| |
|
||||||| || | |||||| | |||||||||| | | || || |||||||||||||| || || || | |||| ||||| || |||| ||| |||| |
|
|
| T |
52772032 |
attcaaaaagctgcaaaggaagtgattcttttagcatgacaaaagagcaatatgaacatctggttaatcttcttcaaactcaacaaagttcttctagcaa |
52772131 |
T |
|
| Q |
200 |
ggtgaatcatgtcacaaatcatgcgactttagttatatcca |
240 |
Q |
| |
|
|||||| |||||||| ||||||| ||| | || |||||||| |
|
|
| T |
52772132 |
ggtgaaccatgtcactaatcatgtgacatcaggtatatcca |
52772172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 1616000 - 1615915
Alignment:
| Q |
58 |
aactcttctcttgagttgaatgaagaaagggaggatttggaagattcaaagagtt-caaaggcaatgattcttttggattcaccaa |
142 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| | || |||||||||| || ||||||||||||||| | ||| |||||||| |
|
|
| T |
1616000 |
aactcttcgcttgaattaaatgaagaaagggaggacattgatgattcaaagatttacaaaggcaatgattcatatggtttcaccaa |
1615915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 53977079 - 53977115
Alignment:
| Q |
76 |
aatgaagaaagggaggatttggaagattcaaagagtt |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53977079 |
aatgaagaaagggaggatttggatgattcaaagagtt |
53977115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 53977141 - 53977179
Alignment:
| Q |
125 |
ttcttttggattcaccaaggagcaatatgaacaacttgt |
163 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
53977141 |
ttcttttggaatcaccaaggaacaatatgaacaacttgt |
53977179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 97023 - 96785
Alignment:
| Q |
1 |
ttataggaaacatggatttcctccacattttggtaaaaattatgctatcgctataacaactcttctcttgagttgaatgaagaaagggaggatttggaag |
100 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| |||||| |||| ||||| |||| |||| || || |||||| || ||||||||||||||||| | || | |
|
|
| T |
97023 |
ttataagaaacatggttttcctccaaattatggtaagaattttgctactgcta--acaattcctcccttgagatgcatgaagaaagggaggatcttgatg |
96926 |
T |
|
| Q |
101 |
attcaaagag-ttcaaaggcaatgattcttttggattcaccaaggagcaatatgaacaacttgtcaacttggttcagactcagtaaggttcctctcgcaa |
199 |
Q |
| |
|
||||||| || | |||||| | |||||||||| | | || || |||||||||||||| || || || | |||| ||||| || |||| ||| |||| |
|
|
| T |
96925 |
attcaaaaagctgcaaaggaagtgattcttttagcatgacaaaagagcaatatgaacatctggttaatcttcttcaaactcaacaaagttcttctagcaa |
96826 |
T |
|
| Q |
200 |
ggtgaatcatgtcacaaatcatgcgactttagttatatcca |
240 |
Q |
| |
|
|||||| |||||||| ||||||| ||| | || |||||||| |
|
|
| T |
96825 |
ggtgaaccatgtcactaatcatgtgacatcaggtatatcca |
96785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 250140 - 249902
Alignment:
| Q |
1 |
ttataggaaacatggatttcctccacattttggtaaaaattatgctatcgctataacaactcttctcttgagttgaatgaagaaagggaggatttggaag |
100 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| |||||| |||| ||||| |||| |||| || || |||||| || ||||||||||||||||| | || | |
|
|
| T |
250140 |
ttataagaaacatggttttcctccaaattatggtaagaattttgctactgcta--acaattcctcccttgagatgcatgaagaaagggaggatcttgatg |
250043 |
T |
|
| Q |
101 |
attcaaagag-ttcaaaggcaatgattcttttggattcaccaaggagcaatatgaacaacttgtcaacttggttcagactcagtaaggttcctctcgcaa |
199 |
Q |
| |
|
||||||| || | |||||| | |||||||||| | | || || |||||||||||||| || || || | |||| ||||| || |||| ||| |||| |
|
|
| T |
250042 |
attcaaaaagctgcaaaggaagtgattcttttagcatgacaaaagagcaatatgaacatctggttaatcttcttcaaactcaacaaagttcttctagcaa |
249943 |
T |
|
| Q |
200 |
ggtgaatcatgtcacaaatcatgcgactttagttatatcca |
240 |
Q |
| |
|
|||||| |||||||| ||||||| ||| | || |||||||| |
|
|
| T |
249942 |
ggtgaaccatgtcactaatcatgtgacatcaggtatatcca |
249902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13986894 - 13987132
Alignment:
| Q |
1 |
ttataggaaacatggatttcctccacattttggtaaaaattatgctatcgctataacaactcttctcttgagttgaatgaagaaagggaggatttggaag |
100 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| |||||| |||| ||||| |||| |||| || || |||||| || ||||||||||||||||| | || | |
|
|
| T |
13986894 |
ttataagaaacatggttttcctccaaattatggtaagaattttgctactgcta--acaattcctcccttgagatgcatgaagaaagggaggatcttgatg |
13986991 |
T |
|
| Q |
101 |
attcaaagag-ttcaaaggcaatgattcttttggattcaccaaggagcaatatgaacaacttgtcaacttggttcagactcagtaaggttcctctcgcaa |
199 |
Q |
| |
|
||||||| || | |||||| | |||||||||| | | || || |||||||||||||| || || || | |||| ||||| || |||| ||| |||| |
|
|
| T |
13986992 |
attcaaaaagctgcaaaggaagtgattcttttagcatgacaaaagagcaatatgaacatctggttaatcttcttcaaactcaacaaagttcttctagcaa |
13987091 |
T |
|
| Q |
200 |
ggtgaatcatgtcacaaatcatgcgactttagttatatcca |
240 |
Q |
| |
|
|||||| |||||||| ||||||| ||| | || |||||||| |
|
|
| T |
13987092 |
ggtgaaccatgtcactaatcatgtgacatcaggtatatcca |
13987132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 18253001 - 18253039
Alignment:
| Q |
125 |
ttcttttggattcaccaaggagcaatatgaacaacttgt |
163 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18253001 |
ttcttttggaatcaccaaggagcaatatgaacaacttgt |
18253039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 18252939 - 18252975
Alignment:
| Q |
76 |
aatgaagaaagggaggatttggaagattcaaagagtt |
112 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |
|
|
| T |
18252939 |
aatgaagaaagggaggatttggatgagtcaaagagtt |
18252975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28302343 - 28302395
Alignment:
| Q |
1 |
ttataggaaacatggatttcctccacattttggtaaaaattatgctatcgcta |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||| ||||||| |||| |
|
|
| T |
28302343 |
ttataggaaacatggatttcctccacattttggaaagaatcatgctatggcta |
28302395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 15192123 - 15192161
Alignment:
| Q |
125 |
ttcttttggattcaccaaggagcaatatgaacaacttgt |
163 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15192123 |
ttcttttggaatcaccaaggagcaatatgaacaacttgt |
15192161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 15192061 - 15192097
Alignment:
| Q |
76 |
aatgaagaaagggaggatttggaagattcaaagagtt |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
15192061 |
aatgaagaaagggaggatttggatgattcaaaaagtt |
15192097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 17913 - 17813
Alignment:
| Q |
76 |
aatgaagaaagggaggatttggaagattcaaagagtt-caaagg---------caatga---ttcttttggattcaccaaggagcaatatgaacaacttg |
162 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||| || ||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17913 |
aatgaagaaagggaggatttggatgattcaaagagttgcaaagggaatagcaacactgaaccttcttttggaatcaccaaggagcaatatgaacaacttg |
17814 |
T |
|
| Q |
163 |
t |
163 |
Q |
| |
|
| |
|
|
| T |
17813 |
t |
17813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 28293 - 28257
Alignment:
| Q |
76 |
aatgaagaaagggaggatttggaagattcaaagagtt |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28293 |
aatgaagaaagggaggatttggatgattcaaagagtt |
28257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 28231 - 28193
Alignment:
| Q |
125 |
ttcttttggattcaccaaggagcaatatgaacaacttgt |
163 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
28231 |
ttcttttggaatcaccaaggaacaatatgaacaacttgt |
28193 |
T |
|
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