View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_low_15 (Length: 313)
Name: NF7134_low_15
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 18219190 - 18218907
Alignment:
| Q |
9 |
agcagagatagaaaggctgaaaagtggtttccaaatttgcaaaccaagagggacctttatgtggccaaacatgagcttgtctccacatgttgtaaccaac |
108 |
Q |
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| T |
18219190 |
agcaaagatagaaaggctgaaaagtggtttccaaatttgcaaaccaagagggacctttatgtggccaaacatgagcttgtctccacatgttgtaaccaac |
18219091 |
T |
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| Q |
109 |
cttgatgaacatactgtggtcccaaccccaacctcagcttcctcatctaccacctcagcacccaagcttgtctcaaattccaacactcataacttgtcat |
208 |
Q |
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| T |
18219090 |
cttgatgaacatactgtggtcccaaccccaacctcagcttcctcatctaccacctcagcacccaagcttgtctcaaattccaacactcataacttgtcat |
18218991 |
T |
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| Q |
209 |
tgtccatacctattccatcttctcctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtcactg |
292 |
Q |
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| T |
18218990 |
tgtccatacctattccatcttctcctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtcactg |
18218907 |
T |
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Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 43011093 - 43010995
Alignment:
| Q |
48 |
caaaccaagagggacctttatgtggccaaacatgagcttgtctccacatgttgtaaccaaccttgatgaacatactgtggtcccaaccccaacctcagc |
146 |
Q |
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| T |
43011093 |
caaaacaagagggacctttatgtggtcaaatacgagtttgtatccacatgttgtaaccaaccttgatgaacacactgtggtcccaaccccatcctcagc |
43010995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 43010984 - 43010927
Alignment:
| Q |
232 |
cctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtca |
289 |
Q |
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| T |
43010984 |
cctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtca |
43010927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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