View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_low_17 (Length: 296)
Name: NF7134_low_17
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 53434500 - 53434233
Alignment:
| Q |
13 |
tttaaccacagtgttaagaaggtaattaattaatatatatgatattcaattagctagtactattgtgaaatgtgattaactaattttattgatgatatgt |
112 |
Q |
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| T |
53434500 |
tttaagcacagtgttaagaaggtaattaat----atatatgatattcaattagctagtactattgtgaaatgtgattaactaattttattgatgatatgt |
53434405 |
T |
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| Q |
113 |
gaatg---ggtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagtt |
209 |
Q |
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| T |
53434404 |
gaatgaatggtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagtaaatttagtt |
53434305 |
T |
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| Q |
210 |
gctcaacaacctggagttgtgtctgtgtttccggatcccatcctaaagctttacacaacacgttcttgggat |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53434304 |
gctcaacaacctggagttgtgtctgtgtttccggatcccatcctaaagctttacacaacacgttcttgggat |
53434233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 109 - 281
Target Start/End: Complemental strand, 26099344 - 26099173
Alignment:
| Q |
109 |
atgtgaatgggtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagt |
208 |
Q |
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| T |
26099344 |
atgtgaatgg-tttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaat |
26099246 |
T |
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| Q |
209 |
tgctcaacaacctggagttgtgtctgtgtttccggatcccatcctaaagctttacacaacacgttcttgggat |
281 |
Q |
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| T |
26099245 |
tgctcaacaacctggagttgtgtctgtgtttctggatcccatcctaaagcttcacacaacacgttcttgggat |
26099173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 281
Target Start/End: Original strand, 48370842 - 48371004
Alignment:
| Q |
119 |
gtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagttgctcaacaa |
218 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || ||||| |||||||||||| | | ||||||||||| |
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| T |
48370842 |
gtttaggaatgaaaaagctctagtacataactataagcacggattctcaggcttcgcagctcgtttatcgaaaaatgaagcagcctcaattgctcaacaa |
48370941 |
T |
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| Q |
219 |
cctggagttgtgtctgtgtttccggatcccatcctaaagctttacacaacacgttcttgggat |
281 |
Q |
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| T |
48370942 |
cctggagttgtgtctgtgtttccagatcccattctgaagcttcacacaactcattcttgggat |
48371004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 53426233 - 53426072
Alignment:
| Q |
120 |
tttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagttgctcaacaac |
219 |
Q |
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||||||||||| |||||||||||||| ||||| ||| |||||||||||||||| || || || |||||||||| ||||||||| | | |||||||||||| |
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| T |
53426233 |
tttaggaatgagaaagctctagtacataactacaaacacggattctcaggctttgcggctcgtttatcaaaaagtgaagcaaactcaattgctcaacaac |
53426134 |
T |
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| Q |
220 |
ctggagttgtgtctgtgtttccggatcccatcctaaagctttacacaacacgttcttgggat |
281 |
Q |
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|||||||||||||||| || || |||||||| || ||||| | |||||||||||||||||| |
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| T |
53426133 |
ctggagttgtgtctgtcttccctgatcccattctgaagctccatacaacacgttcttgggat |
53426072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 281
Target Start/End: Complemental strand, 53321909 - 53321770
Alignment:
| Q |
142 |
tacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagttgctcaacaacctggagttgtgtctgtgtttcc |
241 |
Q |
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|||||||||| ||| | ||||||||||| || ||||| | |||||||| |||||||||| | | | ||||||||||||||||||||||| |||||||| |
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| T |
53321909 |
tacacaactacaaacatggattctcaggttttgcagctcttctatcaaaacatgaagcaaactcaatagctcaacaacctggagttgtgtccgtgtttcc |
53321810 |
T |
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| Q |
242 |
ggatcccatcctaaagctttacacaacacgttcttgggat |
281 |
Q |
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| T |
53321809 |
caattccatcctgaaactccacacaacacgttcttgggat |
53321770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 53310931 - 53310833
Alignment:
| Q |
183 |
ttatcaaaaaatgaagcaaatttagttgctcaacaacctggagttgtgtctgtgtttccggatcccatcctaaagctttacacaacacgttcttgggat |
281 |
Q |
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|||| ||||||||||||||| | | ||||||| |||| |||||||||| |||| || | |||||||| ||||||||| | |||||||||||||||||| |
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| T |
53310931 |
ttattaaaaaatgaagcaaactcaattgctcatcaacatggagttgtggctgtcttcctcgatcccattctaaagcttcatacaacacgttcttgggat |
53310833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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