View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_low_2 (Length: 608)
Name: NF7134_low_2
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 3 - 389
Target Start/End: Complemental strand, 37757262 - 37756876
Alignment:
| Q |
3 |
aaggtttaatcttgtaacttttttaactctaacttttaaacttgcaacgcaagcattataatttgttattttttcatgaaatgatgaatatttagtgtag |
102 |
Q |
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| T |
37757262 |
aaggtttaatcttttaacttttttaactctaacttttaaacttgcaacgcaagcattataatttgatattttttcatgaaatgatgaatatttagtgtag |
37757163 |
T |
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| Q |
103 |
tgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaatatggttacaaagtaagcctacatgagaagatgatgaatttct |
202 |
Q |
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| T |
37757162 |
tgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaagatggttacaaagtaagcctacatgagaagatgatgaatttct |
37757063 |
T |
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| Q |
203 |
attcgatgacggtgtaaaattattttacactgtcagaacatagtgatagtcatttaactcttattagttgaaatgaaaatgaaaacagtaaagtaaacac |
302 |
Q |
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| T |
37757062 |
attcgatgacggtgtaaaattattttacactgtcagtacatagtgatagtcatttaactcttactagttgaaatgaaaatgaaaacagtaaagtaaacag |
37756963 |
T |
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| Q |
303 |
gcacttaacttttccttgttattaatttggcatggagtggattgtcatgttttggatttttggaattatatgggttgggtgagggtc |
389 |
Q |
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| T |
37756962 |
gcacttaacttttccttgttattaatttggcatggagtggattgtcatgttttggatttttggaattatatgggttgggtgagggtc |
37756876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 37756721 - 37756640
Alignment:
| Q |
510 |
tcagggtattatgattggattttgcatattggcacctaagatgtgaaatatactaataaacagtaactgtttactatccttg |
591 |
Q |
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| T |
37756721 |
tcagggtattatgattggattttgcatattggcacctaagatgtgaaatatactaataaactgtaactgtttactatccttg |
37756640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 463 - 543
Target Start/End: Complemental strand, 37756802 - 37756722
Alignment:
| Q |
463 |
ctatgatggcgatcatatgtttaggttgaagaggaatgccatcactttcagggtattatgattggattttgcatattggca |
543 |
Q |
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| T |
37756802 |
ctatgatggtgatcatatgtttaggttgaagaggaatgccatcactttcagggtattatgattggattttgcatattggca |
37756722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 47552932 - 47552834
Alignment:
| Q |
138 |
tatgttgtagttatttttaaaatatggttacaaagtaagcctacatgagaagatgatgaatttctattcgatgacggtgtaaaattattttacactgtc |
236 |
Q |
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| T |
47552932 |
tatgtggtagttattttgaaaagacagttataaagtaggcctacatagtaagatgatgagttcctattggatgacggtgtaaaactattttatactgtc |
47552834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 47549905 - 47549953
Alignment:
| Q |
189 |
gatgatgaatttctattcgatgacggtgtaaaattattttacactgtca |
237 |
Q |
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| T |
47549905 |
gatggtgagtttctattcgaaaacggtgtaaaattattttacattgtca |
47549953 |
T |
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