View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_low_21 (Length: 260)
Name: NF7134_low_21
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 32413747 - 32413993
Alignment:
| Q |
1 |
gtcaagagattcgcgaaattcgtgtctcgagttttgtctcttcgaaatgactcaacctcattgcatactgtggatttttgccgcactgcaatcgtagagc |
100 |
Q |
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| T |
32413747 |
gtcaagagattcgcgaaattcgtgtctcgagttttgtctcttcgaaatgactcaacctcattgcatactgtggatttttgccgcactgcaatcgtagagc |
32413846 |
T |
|
| Q |
101 |
cttacctactnnnnnnnnttgtaaaatatgctgtttcgcacaacgtccagcaattagatatatctgttgctggtaatatggaatactttccacctagttt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32413847 |
cttacctactcaaaaaaattgtaaaatatgctgtttcgcacaacgtccagcaattagatgtatctgttgctggtaatatggaatactttccacctagttt |
32413946 |
T |
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| Q |
201 |
cttttcttgtcggactttaacgtctcttagtctcgacctttctgatg |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32413947 |
cttttcttgtcggactttaacgtctcttagtctcgacctttccgatg |
32413993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 27701846 - 27701805
Alignment:
| Q |
16 |
aaattcgtgtctcgagttttgtctcttcgaaatgactcaacc |
57 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||| |
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| T |
27701846 |
aaattcgtgtctcgggttttgtctcttcgcgatgactcaacc |
27701805 |
T |
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