View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_low_28 (Length: 205)
Name: NF7134_low_28
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_28 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 6527249 - 6527052
Alignment:
| Q |
1 |
tctcaacaatgatattcttcgtctgaaacacatgtttattccacttggagttggttaactttgtactgatgctcctagtttccttggaatgatgcattgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |
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| T |
6527249 |
tctcaacaatgatattcttcgtctgaaacacatgtttattccacttggagttggttaactttgtactgatgctcctaatttccttggagtggtgcattgc |
6527150 |
T |
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| Q |
101 |
agaatggttatgtgttacatttggcagcatataaaatgca---------ttgtaagaatcattgtaagagtcattggttgttccaaacaccatggaag |
189 |
Q |
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| T |
6527149 |
agaatggttctgtgttacatttggcagcatataaaatgcagtccagtcttagtaaaaatcattggaagagtcattggttgttccaaacaccatggaag |
6527052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 6848830 - 6848633
Alignment:
| Q |
1 |
tctcaacaatgatattcttcgtctgaaacacatgtttattccacttggagttggttaactttgtactgatgctcctagtttccttggaatgatgcattgc |
100 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |
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| T |
6848830 |
tctcaacaataatattctctgtctgaaacacatgtttattccacttggagttggttaactttgtactgatgctcctagtttccttggagtggtgcgttgc |
6848731 |
T |
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| Q |
101 |
agaatggttatgtgttacatttggcagcatataaaatgca---------ttgtaagaatcattgtaagagtcattggttgttccaaacaccatggaag |
189 |
Q |
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| T |
6848730 |
agaatggttctgtgttacatttggcagcatataaaatgcagtccagtcttagtaagaatcattgtaagagtcattggttgttccaaacaccatggaag |
6848633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 6796636 - 6796556
Alignment:
| Q |
101 |
agaatggttatgtgttacatttggcagcatataaaatgca---------ttgtaagaatcattgtaagagtcattggttgt |
172 |
Q |
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| T |
6796636 |
agaatggttctgtgttacatttggcagcatataaaatgcagtcctatctttgtaagaatcattgtatgagtcattgattgt |
6796556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 6549862 - 6549823
Alignment:
| Q |
97 |
ttgcagaatggttatgtgttacatttggcagcatataaaa |
136 |
Q |
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| T |
6549862 |
ttgcagaatggttctgtgttacatttggcagcatataaaa |
6549823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6558544 - 6558494
Alignment:
| Q |
1 |
tctcaacaatgatattcttcgtctgaaacacatgtttattccacttggagt |
51 |
Q |
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|||| ||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
6558544 |
tctctacaatgatattctctgtctgaaacacatatttattccacttggagt |
6558494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 6558420 - 6558384
Alignment:
| Q |
103 |
aatggttatgtgttacatttggcagcatataaaatgc |
139 |
Q |
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| T |
6558420 |
aatggttctgtgttacatttggcagcatataaaatgc |
6558384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 11953 - 11759
Alignment:
| Q |
1 |
tctcaacaatgatattcttcgtctgaaacacatgtttattccacttggagttggttaactttgtactgatgctcctagtttccttggaatgatgcattgc |
100 |
Q |
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| T |
11953 |
tctcaacaatgatattctctgtctgaaacacatgtttattccacttggagttggttaactttgtactgatgctcctagtttccttggagtggtgcattgc |
11854 |
T |
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| Q |
101 |
agaatggttatgtgttacatttggcagcatataaaatgca--------ttgtaagaatcattgtaagagtcattggttgttccaaacaccatggaag |
189 |
Q |
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|||||||| | ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11853 |
agaatggt--tctgttacatttggcagcatataaagtgcagtcagtcttggtaagaatcattgtaagagtcattggttgttccaaacaccatggaag |
11759 |
T |
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