View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_low_3 (Length: 583)
Name: NF7134_low_3
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 573
Target Start/End: Original strand, 29448326 - 29448881
Alignment:
| Q |
16 |
tcaactccatatgcttattaggagcaaaagcaataagcaatatatggcagaatatgaaaaagtttttgatatctagattcataacgcaacctctcatgac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29448326 |
tcaactccatatgcttattaggagcaaaagcaataagcaatatatggcagaatatgaaaaagtttttgatatctagattcataacgcaacctctcatgac |
29448425 |
T |
|
| Q |
116 |
aagattgcaaacatgataatatggtgcgtaggatttaaagttgatgttgtgataaaaatttatattcttcctgaatcttgattcttcttttggtagcttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
29448426 |
aagattgcaaacatgataatatggtgcgtaggatttaaagttgatgttgtgctaaa--tttatattgttcttgaatcttgattcttcttttggtagcttt |
29448523 |
T |
|
| Q |
216 |
attgctatttatggttctaaggcaatgctttttaattatatgttgagtatgactcgtattcgttgataagtaggcagacacaaaagcgtagcgagtggcc |
315 |
Q |
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| T |
29448524 |
attgctatttatggttctaaggcaatgctttttaattatatgttgagtatgactcgtattcgttgataagtaggcagacacaaaagcgtagcgagtggcc |
29448623 |
T |
|
| Q |
316 |
tgacaacagcggtaaactagcaaaaaagacggtagcatttaaacaagttttggacttcgtaaaattgtattttgcaccaatatttcaatgcataatagac |
415 |
Q |
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| T |
29448624 |
tgacaacagcggtaaactagcaaaatagacggtagcatttaaacaagttttggacttcgtaaaattgtattttgcaccaatatttcaatgcataatagac |
29448723 |
T |
|
| Q |
416 |
aagtacactttgctttcacagacgcgggcacaattggtcaaagtctgcgatgaagcgttgtgttcttgagcatttattcatactttagaaccgaattttc |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29448724 |
aagtacactttgctttcacagacgcgggcacaattggtcaaagtctgcgatcaagcgttgtgttcttgagcatttattcatactttagaaccgaattttc |
29448823 |
T |
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| Q |
516 |
tattctaacattattattgaaaaattagggactaaaactgaactaacccttttgatgt |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29448824 |
tattctaacattattattgaaaaattagggactaaaactgaactaacccttttgatgt |
29448881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 31864161 - 31864121
Alignment:
| Q |
256 |
tgttgagtatgactcgtattcgttgataagtaggcagacac |
296 |
Q |
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| T |
31864161 |
tgttgagtatgactcatattcgctgataagtgggcagacac |
31864121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 8072970 - 8072938
Alignment:
| Q |
256 |
tgttgagtatgactcgtattcgttgataagtag |
288 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
8072970 |
tgttgagtatgactcgtattcgctgataagtag |
8072938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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