View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7134_low_8 (Length: 413)
Name: NF7134_low_8
Description: NF7134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7134_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 32246774 - 32247099
Alignment:
| Q |
18 |
catagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaagccaaagtaattgttgatttcttag |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32246774 |
catagtagagtgggcaaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaagccaaagtaattgttgatttctttg |
32246873 |
T |
|
| Q |
117 |
ctaactattttgttgatagtgatgatgatttcgaacaagaatacatatgtttgaatccttggaaactatattttgatggttcatgccatggtaaaggtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32246874 |
ctaactattttgttgatagtgatgatgatttcgaacaagaatacatatgtttgaatccttggaaactatattttgatgtttcatgccatggtaaaggtag |
32246973 |
T |
|
| Q |
217 |
tagaaattgagatgttgataattcaacctgatgaggtatatccaactaaattcatgtacaaattatcgatcaaatgtttgaataatgaagcatttatatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32246974 |
tagaaattgagatgttgataattcaacctgatgaggtatatccaactaaattcatgtacaaattatcgatcaaatgtttgaataatgaagcatttatatt |
32247073 |
T |
|
| Q |
317 |
tcaacctaaaaaatgttttcaataat |
342 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
32247074 |
tcaacctaaaaaatgttttcaataat |
32247099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 32251851 - 32252152
Alignment:
| Q |
18 |
catagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaagccaaagtaattgttgatttcttag |
116 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32251851 |
catagtagagtgggcaaaggagcactagcgttaactgaaccttcattgacttatgtttcgttaaaagcaatgaaagccaaaataattgttgatttcttag |
32251950 |
T |
|
| Q |
117 |
ctaactattttgttgatagtgatgatgatttcgaacaagaatacatatgtttgaatccttggaaactatattttgatggttcatgccatggtaaaggtag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||| |
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| T |
32251951 |
ctaactattttgttgatagtgatgatgatttcaaacaagattacataagtttgagtccttggaaactatattttg------------atggtaaaggtag |
32252038 |
T |
|
| Q |
217 |
tagaaattgagatgttgataattcaacctgatgaggtatatccaactaaattcatgtacaaattatcgatcaaatgtttgaataatgaagcatttatatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32252039 |
tagaaattgagatgttgataattcaacctaacgaggtatatccaactaaattcatgtacaaattatcgatcaaatgttcgaataatgaagcatttatatt |
32252138 |
T |
|
| Q |
317 |
tcaacctaaaaaat |
330 |
Q |
| |
|
| ||||||| |||| |
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|
| T |
32252139 |
tgaacctaagaaat |
32252152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 32247578 - 32247627
Alignment:
| Q |
361 |
atcataattggaaggtgtattactagcatgaatgcagcctatagtattat |
410 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
32247578 |
atcataattggaaggtgtattactggcatgaatgcagcctatagtgttat |
32247627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 32252337 - 32252386
Alignment:
| Q |
361 |
atcataattggaaggtgtattactagcatgaatgcagcctatagtattat |
410 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| |||| ||| |||| |
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| T |
32252337 |
atcacaattggaaggtgtattactggcatgaatgcatcctacagtgttat |
32252386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 25976853 - 25976719
Alignment:
| Q |
18 |
catagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaagccaaagtaattgttgatttcttag |
116 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
25976853 |
catagtagagtgggcaaatgagcactagttttaactgaactttcattgacttatgtttcgctaaaagcaatgaaagccaaagtaatttttgatttcttag |
25976754 |
T |
|
| Q |
117 |
ctaactattttgttgatagtgatgatgatttcgaa |
151 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
25976753 |
ctaactattttgttgatagtgatgatgatttcgaa |
25976719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 5558767 - 5558704
Alignment:
| Q |
96 |
aagtaattgttgatttcttagctaactattttgttgatagtgatgatgatttcgaacaagaata |
159 |
Q |
| |
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|||||||||||||||| |||||||| |||| ||||||| |||||||||| ||||||||||| |
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| T |
5558767 |
aagtaattgttgatttattagctaattattccattgatagcaatgatgattttgaacaagaata |
5558704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 5558696 - 5558654
Alignment:
| Q |
264 |
aaattcatgtacaaattatcgatcaaatgtttgaataatgaag |
306 |
Q |
| |
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|||||||||| ||||||||| ||||||||||| |||||||||| |
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| T |
5558696 |
aaattcatgtgcaaattatcaatcaaatgtttaaataatgaag |
5558654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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