View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7135_high_4 (Length: 249)
Name: NF7135_high_4
Description: NF7135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7135_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 8570141 - 8570381
Alignment:
| Q |
1 |
aatgtgacctcgagtaggggtcatttatagttcaacatcaataattaatgaaagcaatcgaacaataaaagaagaagcagacaaggtagctgcttttttg |
100 |
Q |
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| T |
8570141 |
aatgtgacctcgagtaggggtcatttatagttcaacatcaataattaatgaaagcaatcgaacaataaaagaagaagcagacaaggtagctgcttttttg |
8570240 |
T |
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| Q |
101 |
atcatattcttctaataaaggctaattaagtaagtattatttgattcatgtggtagctaagtaagtcatcaaaggggtcgagtatgtcttccagttgccc |
200 |
Q |
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| T |
8570241 |
atcatattcttctaataaaggctaattaagtaagtaata-ttgattcatgtggtagctaagtaagtcatcaaaggggtcgagtatgtcttccagttgccc |
8570339 |
T |
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| Q |
201 |
taccacaaagtaatgcattcttaggaatagggtattcatctc |
242 |
Q |
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| T |
8570340 |
taccacaaagtaatgcattcttaggaatagggtattcatctc |
8570381 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 53748445 - 53748507
Alignment:
| Q |
169 |
tcaaaggggtcgagtatgtcttccagttgccctaccacaaagtaatgcattcttaggaatagg |
231 |
Q |
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| T |
53748445 |
tcaaagggggcgggtatgtctcccacttgccctaccacaaagacgtgcattctttggaatagg |
53748507 |
T |
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