View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7135_low_3 (Length: 249)
Name: NF7135_low_3
Description: NF7135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7135_low_3 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 5250802 - 5250569
Alignment:
| Q |
2 |
ccaactacatctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaacc |
101 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
5250802 |
ccaactacagctttggtggatgaatcgagcatatatggtagagatggtgacaaggaggagttaattgattttttactgtctgacataaacagtggcaatc |
5250703 |
T |
|
| Q |
102 |
atgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaact |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250702 |
atgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggatgcaggagcattttgaact |
5250603 |
T |
|
| Q |
202 |
taaagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5250602 |
taaagcttgggtctatgtttcagaaacttttgat |
5250569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 4388333 - 4388566
Alignment:
| Q |
2 |
ccaactacatctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaacc |
101 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| | |||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4388333 |
ccaactacatctttggtggatggatcgagcatatatggtagaaacggtgacaaagaggagttagtcaactttttactgtctgacatagacagcggcaacc |
4388432 |
T |
|
| Q |
102 |
atgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaact |
201 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||||||| |
|
|
| T |
4388433 |
aagtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaatgaccgcaggatgaaagagcattttgaact |
4388532 |
T |
|
| Q |
202 |
taaagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
4388533 |
taaagcttgggtctacgtttcagaaacttttgat |
4388566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5268690 - 5268456
Alignment:
| Q |
1 |
gccaactacatctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5268690 |
gccaactacatctttggtggatgaatccagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacaagggcaac |
5268591 |
T |
|
| Q |
101 |
catgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||| ||||| ||||| ||| |
|
|
| T |
5268590 |
catgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccacccttgctcaactcgtgtacaatgaccaaaggatcaaggagaattttaaac |
5268491 |
T |
|
| Q |
201 |
ttaaagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||||| |
|
|
| T |
5268490 |
ataaagcctgggtctatgtttcggaaatttttgat |
5268456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5299365 - 5299134
Alignment:
| Q |
1 |
gccaactacatctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaac |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||| ||| |||||||| || |||||||| |||| || |
|
|
| T |
5299365 |
gccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatgctggcgac |
5299266 |
T |
|
| Q |
101 |
catgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaac |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||||||||| || ||| ||| ||| | || ||||||| |
|
|
| T |
5299265 |
cgtgtaccaataatcagcatagtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatacagaaacagtttgaac |
5299166 |
T |
|
| Q |
201 |
ttaaagcttgggtctatgtttcagaaactttt |
232 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||| |
|
|
| T |
5299165 |
taaaagcctgggtctatgtttcggaaactttt |
5299134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 8455272 - 8455054
Alignment:
| Q |
17 |
gtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatca |
116 |
Q |
| |
|
|||||||| | ||||||||||||| |||||| ||| ||||| | |||||||| |||||||| | | || || ||||||||||| || |||||||||| |
|
|
| T |
8455272 |
gtggatgagtcgagcatatatggtcgagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagtggcaaccaggttccaataatca |
8455173 |
T |
|
| Q |
117 |
gcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtcta |
216 |
Q |
| |
|
||||||| ||| | || || |||||||| ||||| |||||| ||||||||||||| ||| ||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
8455172 |
gcatagtcggtttaggagggatgggtaaaaccacccttgctaagcttgtgtacaatgacaacaagataaaggagcattttgaacttaaagcatgggtcta |
8455073 |
T |
|
| Q |
217 |
tgtttcagaaacttttgat |
235 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
8455072 |
tgtttcagaatcttttgat |
8455054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 6947873 - 6947669
Alignment:
| Q |
31 |
catatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatcagcatagtgggtctc |
130 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||||| |||||||| | | || |||||||||||||| || ||||||||||||||||||||| | |
|
|
| T |
6947873 |
catatatggtagagatgatgataaggacaagttaatcaagtttttacttgcaggcaatgacagtggcaaccaggttccaataatcagcatagtgggttta |
6947774 |
T |
|
| Q |
131 |
ggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtttcagaaactt |
230 |
Q |
| |
|
|| || ||||| || ||||| |||||| ||||||||||||| ||| ||| ||| ||||||||||||| |||||| | |||||||| ||||||||| ||| |
|
|
| T |
6947773 |
ggagggatggggaaaaccacccttgctaagcttgtgtacaatgacaacaagatagaggagcattttgaccttaaaacatgggtctacgtttcagaatctt |
6947674 |
T |
|
| Q |
231 |
ttgat |
235 |
Q |
| |
|
||||| |
|
|
| T |
6947673 |
ttgat |
6947669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 6736596 - 6736394
Alignment:
| Q |
29 |
agcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatcagcatagtgggtc |
128 |
Q |
| |
|
||||||||||||||||||| ||| ||||| | ||||||| |||||||| | | || |||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
6736596 |
agcatatatggtagagatgatgataaggaaaaactaatcaagtttttacttacaggcaatgacagtggcaaccaggttccaataattagcatagtgggtt |
6736497 |
T |
|
| Q |
129 |
tcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtttcagaaac |
228 |
Q |
| |
|
| || || ||||| || ||||| |||||| ||||||||||||||||| ||| ||| || ||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
6736496 |
taggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaagcatgggtctatgtttcagaatc |
6736397 |
T |
|
| Q |
229 |
ttt |
231 |
Q |
| |
|
||| |
|
|
| T |
6736396 |
ttt |
6736394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 6448286 - 6448411
Alignment:
| Q |
110 |
ataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagctt |
209 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||| || ||| ||| |||||||||||||||||||| ||| |
|
|
| T |
6448286 |
ataatcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatctt |
6448385 |
T |
|
| Q |
210 |
gggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
6448386 |
gggtctatgtttcagaatattttgat |
6448411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 6553861 - 6554063
Alignment:
| Q |
29 |
agcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatcagcatagtgggtc |
128 |
Q |
| |
|
|||||||||||||| |||| ||| ||||| | |||||||| |||||||| | || ||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
6553861 |
agcatatatggtagggatgttgataaggaaaaattaatcaagtttttacttgaaggcaatgacggtggcaaccgggttccaataatcagcatagtgggtt |
6553960 |
T |
|
| Q |
129 |
tcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtttcagaaac |
228 |
Q |
| |
|
| || || ||||| || ||||| |||||| ||||||||||||||||| ||| ||| || ||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
6553961 |
taggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaagcatgggtctatgtttcagaatc |
6554060 |
T |
|
| Q |
229 |
ttt |
231 |
Q |
| |
|
||| |
|
|
| T |
6554061 |
ttt |
6554063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 6721467 - 6721700
Alignment:
| Q |
10 |
atctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtacca |
109 |
Q |
| |
|
||||||||||||||||| | |||||||||| |||| ||| || || || |||||||||| || || ||||| | ||||||| |||||| || || |
|
|
| T |
6721467 |
atctttggtggatgaatcggtcatatatggtcgagagcatgagaaagaagaaataatcaatttcttgctttctgatagtgacagtgacaaccaggtgccc |
6721566 |
T |
|
| Q |
110 |
ataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagctt |
209 |
Q |
| |
|
|||||||| ||||||||||| ||| || |||||||| || ||||| |||||||| ||||| ||||||||||| |||||| | |||||||||||||| |
|
|
| T |
6721567 |
ataatcagtatagtgggtctgattgggataggtaagacaacccttgcccagcttgtttacaatgaccacaggatagtggagcaatatgaacttaaagctt |
6721666 |
T |
|
| Q |
210 |
gggtctatgtttcagaaacttttgatattcttcg |
243 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||| |
|
|
| T |
6721667 |
gggtctatctttcagaatcttttgatgttcttcg |
6721700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 8590347 - 8590129
Alignment:
| Q |
17 |
gtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatca |
116 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||| ||| | | ||||||| |||||||| | | || || |||||||||| || |||||||||| |
|
|
| T |
8590347 |
gtggatgagtcgagcatatatggtagagatgttgataagaaaaaactaatcaagtttttacttgcaggcaatgatagtggcaaccgcgttccaataatca |
8590248 |
T |
|
| Q |
117 |
gcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtcta |
216 |
Q |
| |
|
||||||| ||| | || || ||||| || ||||| |||||| ||||||||||||||||| ||| ||| | ||||||||||| |||||||| |||||||| |
|
|
| T |
8590247 |
gcatagtcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtcta |
8590148 |
T |
|
| Q |
217 |
tgtttcagaaacttttgat |
235 |
Q |
| |
|
|||||| ||| |||||||| |
|
|
| T |
8590147 |
tgtttctgaatcttttgat |
8590129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 6519647 - 6519791
Alignment:
| Q |
91 |
cagtggcaaccatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggag |
190 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||| | || ||||||||||| ||||| |||||||| | ||| ||||| ||| ||| || || || |
|
|
| T |
6519647 |
cagtggtaaccaggttccaataatcagcatagtgggtttaggaggaatgggtaaaaccacccttgctcaacatgtctacaatgacaacatgacaaagaag |
6519746 |
T |
|
| Q |
191 |
cattttgaacttaaagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
6519747 |
cattttgaacttaaagcatgggtctatgtttcagaatcttttgat |
6519791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 6479405 - 6479611
Alignment:
| Q |
29 |
agcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatcagcatagtgggtc |
128 |
Q |
| |
|
||||||||||| ||||||| ||||||||| || | ||||| |||||||| | | || |||||||| | ||| || || |||||||||||||| ||| |
|
|
| T |
6479405 |
agcatatatggcagagatgttgacaaggaagaacttatcaaatttttacttgcaggcaatgacagtggaacccaggttccgataatcagcatagttggtt |
6479504 |
T |
|
| Q |
129 |
tcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtttcagaaac |
228 |
Q |
| |
|
| || || ||||| || ||||| |||||| |||||||||||||| || ||| ||| |||| ||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
6479505 |
taggagggatggggaaaaccacccttgctaagcttgtgtacaacaacaacaagatagaggaacattttgaacttaaagcatgggtctatgtttcagaatc |
6479604 |
T |
|
| Q |
229 |
ttttgat |
235 |
Q |
| |
|
|| |||| |
|
|
| T |
6479605 |
ttatgat |
6479611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 6590753 - 6590957
Alignment:
| Q |
31 |
catatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatcagcatagtgggtctc |
130 |
Q |
| |
|
||||||||||||||| ||| || ||||| |||| || |||||||| || |||| ||||| |||||||||||| |||||| | ||||||||| | |
|
|
| T |
6590753 |
catatatggtagagagcatgagaaagaggaaataattaaatttttactttcagacagtcacagtcacaaccatgtacccataatctgtatagtgggtatg |
6590852 |
T |
|
| Q |
131 |
ggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtttcagaaactt |
230 |
Q |
| |
|
||| ||||||||||| || ||||| | |||||| ||||| ||||||| ||| | |||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
6590853 |
attgggatgggtaagacaacccttgcccggcttgtttacaaggaccacaagatactggagcaatttgaacttaaagcttgggtctatgtttcaaaatctt |
6590952 |
T |
|
| Q |
231 |
ttgat |
235 |
Q |
| |
|
||||| |
|
|
| T |
6590953 |
ttgat |
6590957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8472195 - 8471977
Alignment:
| Q |
1 |
gccaactacatctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaac |
100 |
Q |
| |
|
||||||| ||||||| |||||||||| |||| ||||||||| |||||||| || || |||||||| | ||| || ||| ||| |||| ||||||| |
|
|
| T |
8472195 |
gccaactgcatctttagtggatgaatcttccatacgtggtagagaaggtgacaaagaagaattaatcaagtatttgctttcttacaacgacaatggcaac |
8472096 |
T |
|
| Q |
101 |
catgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaac |
200 |
Q |
| |
|
|| ||| ||| ||||||||||||||| | ||| ||||| |||||||| |||||||||||||| ||||| ||||| |||||| | |||| ||||||| |
|
|
| T |
8472095 |
caagtatcaactatcagcatagtgggtttgcctgggatggggaagaccacccttgctcagcttgtctacaatgaccagaggatggacaagcagtttgaac |
8471996 |
T |
|
| Q |
201 |
ttaaagcttgggtctatgt |
219 |
Q |
| |
|
|||||| ||||||| |||| |
|
|
| T |
8471995 |
ttaaagtttgggtccatgt |
8471977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8568343 - 8568577
Alignment:
| Q |
1 |
gccaactacatctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaac |
100 |
Q |
| |
|
||||||| | |||||||||||||||| |||||||||||||||||| ||| || | | ||||||||| ||| || | |||| || |||||||| |
|
|
| T |
8568343 |
gccaactgcgtctttggtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaac |
8568442 |
T |
|
| Q |
101 |
catgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaac |
200 |
Q |
| |
|
||||| |||| || || |||||||| ||||| |||||||||||||| ||||||| ||||| ||||| ||||||| ||| || |||| ||||||| |
|
|
| T |
8568443 |
catgtgagcgtaataagtattgtgggtctaggtgggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaagcaatttgaac |
8568542 |
T |
|
| Q |
201 |
ttaaagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |
|
|
| T |
8568543 |
ttaaagcttgggtccatgtttcagaatcttttgat |
8568577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 13270086 - 13270215
Alignment:
| Q |
104 |
gtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaactta |
203 |
Q |
| |
|
||||| |||||||| ||||||||||| || ||||||||||| | |||||||||||||| ||||| ||||| ||||| |||||||| |||||| ||| |
|
|
| T |
13270086 |
gtacccataatcagtatagtgggtctgatggggatgggtaagacagcccttgctcagcttgtttacaatgaccataggatacaggagcagtttgaattta |
13270185 |
T |
|
| Q |
204 |
aagcttgggtctatgtttcagaaacttttg |
233 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |
|
|
| T |
13270186 |
aagcttgggtctatgttccagaatcttttg |
13270215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 5281208 - 5281084
Alignment:
| Q |
111 |
taatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttg |
210 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||||| |||||| |||||||||| |||||| | || || | ||||||||||||| ||||||||| |
|
|
| T |
5281208 |
taatcaccatagtgggttctggtgggatgggtaagaccacccttgctgagcttgtgtataacgacgatagaattaaagagcattttgaacataaagcttg |
5281109 |
T |
|
| Q |
211 |
ggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
5281108 |
ggtctatgtttcagaattttttgat |
5281084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 7750559 - 7750427
Alignment:
| Q |
103 |
tgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaactt |
202 |
Q |
| |
|
|||||| |||||||| ||||||||| | ||| ||||||||||| || |||| | ||||| ||||||||||||| ||| || ||||| ||||||||| |
|
|
| T |
7750559 |
tgtacccataatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacgaccacaagatacatgagcaatttgaactt |
7750460 |
T |
|
| Q |
203 |
aaagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
7750459 |
aaagcttgggtctatgtttcagaatcttttgat |
7750427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 6883111 - 6882935
Alignment:
| Q |
56 |
gaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttg |
155 |
Q |
| |
|
||||| ||||| || |||||||| |||||||| |||||| ||||| || ||| ||||| || ||||||||||| || ||||||||||| ||||| | |
|
|
| T |
6883111 |
gaggaattaattaaatttttactttctgacattcacagtgacaaccttgcacccataattagtatagtgggtctgatggggatgggtaagacaactctcg |
6883012 |
T |
|
| Q |
156 |
ctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtttcagaaactttt |
232 |
Q |
| |
|
| |||||||| ||||| ||| ||| ||| ||||||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
6883011 |
cccagcttgtttacaatgacgacatgatcacggagcattttgaacttaaagcttgggtgaatgttccagaatctttt |
6882935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 6266249 - 6266122
Alignment:
| Q |
105 |
taccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaa |
204 |
Q |
| |
|
|||| |||||||| ||||||||||| || || |||||||| | ||||| |||||||| ||||| ||||| ||||| |||||||| |||||| |||| |
|
|
| T |
6266249 |
tacccataatcagtatagtgggtctgacggggattggtaagacagcccttgcccagcttgtttacaatgaccataggatacaggagcagtttgaatttaa |
6266150 |
T |
|
| Q |
205 |
agcttgggtctatgtttcagaaactttt |
232 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
6266149 |
agcttgggtccatgtttcagaaactttt |
6266122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 6259786 - 6259595
Alignment:
| Q |
31 |
catatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaaccatgtaccaataatcagcatagtgggtctc |
130 |
Q |
| |
|
||||||||||||||| |||| || ||||| ||||||| |||||||| || |||| ||| | ||||| ||| | |||||||| ||||||||||| |
|
|
| T |
6259786 |
catatatggtagagaacgtgaaaaagaggaaataatcaaatttttactttcagacagttacaaccgaaaccaggtatccataatcagtatagtgggtctg |
6259687 |
T |
|
| Q |
131 |
ggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtttc |
222 |
Q |
| |
|
|| ||||||||||| | ||||| |||||||| ||||| ||||| ||||| |||||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
6259686 |
acggggatgggtaagacagcccttgcccagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttgggtccatgtttc |
6259595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 6900662 - 6900516
Alignment:
| Q |
89 |
gacagtggcaaccatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcagg |
188 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||| | ||| ||||||||||| || || || |||||||| ||| | ||| ||| ||| || |
|
|
| T |
6900662 |
gacagtcgcaaccaagtacccataatcagtgtagtgggtgtgattgggatgggtaagacaaccctcgcccagcttgtttactatgacgacatgatcgtgg |
6900563 |
T |
|
| Q |
189 |
agcattttgaacttaaagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
6900562 |
agcattttgaaattaaagcttgggtccatgtttcggaatcttttgat |
6900516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 6838297 - 6838466
Alignment:
| Q |
2 |
ccaactacatctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaacc |
101 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||||||| ||||| || || || |||| || | ||| |||||| ||| |||| |||||||| |
|
|
| T |
6838297 |
ccaactgcatctttggtggatgaatcttccatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcttacaaggacaatggcaacc |
6838396 |
T |
|
| Q |
102 |
atgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaa |
171 |
Q |
| |
|
| ||| ||| ||||||||||| ||| | ||||| ||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
6838397 |
aagtatcaactatcagcatagttggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaa |
6838466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 6142842 - 6142726
Alignment:
| Q |
104 |
gtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaactta |
203 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||| || |||||||| || ||||| ||| || | ||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
6142842 |
gtacccataatcagtatagtaggtcttcctgggataggtaagacaacccttgcgcagtttatttacaatgaccacaggatacaggagcaatttgaactta |
6142743 |
T |
|
| Q |
204 |
aagcttgggtctatgtt |
220 |
Q |
| |
|
| ||||||||| ||||| |
|
|
| T |
6142742 |
atgcttgggtccatgtt |
6142726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 6917657 - 6917526
Alignment:
| Q |
104 |
gtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaactta |
203 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||| || ||||| || || ||||| || ||||| ||||| || || | |||| ||||||| | ||||||| |
|
|
| T |
6917657 |
gtacccataatcagtatagttggtcttattgggataggtaatacgacccttgcgcaacttgtttacaatgatcataagatgatggagcatgtggaactta |
6917558 |
T |
|
| Q |
204 |
aagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| |
|
|
| T |
6917557 |
aagcttgggtccatgattcagaatcttttgat |
6917526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 6960 - 7102
Alignment:
| Q |
89 |
gacagtggcaaccatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcagg |
188 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| | || || ||||| || ||||| |||||| ||||||||||||| ||| ||| ||| || |
|
|
| T |
6960 |
gacagtggcaaccaggttccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaaagacaacaagataaaga |
7059 |
T |
|
| Q |
189 |
agcattttgaacttaaagcttgggtctatgtttcagaaacttt |
231 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
7060 |
agcattttgaacttaaagcatgggtctatgtttcagaatcttt |
7102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6572693 - 6572911
Alignment:
| Q |
1 |
gccaactacatctttggtggatgaattgagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacagtggcaac |
100 |
Q |
| |
|
||||||| ||||| |||||||| ||| |||||||||||||||| ||||| || || || ||||||| ||| || || ||| ||||| | |||| |
|
|
| T |
6572693 |
gccaactgcatctctggtggataaatcttgcatatatggtagagagggtgagaaagaagaaataatcaaccatttgctttcatacaaagacaacgacaac |
6572792 |
T |
|
| Q |
101 |
catgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaacgaccacaggatgcaggagcattttgaac |
200 |
Q |
| |
|
|| ||| |||||||||||||||||||| | ||||| ||||| |||||||| |||||||||||||| ||||| ||||| |||||| || | || ||||| | |
|
|
| T |
6572793 |
caagtatcaataatcagcatagtgggtttgggtgggatggggaagaccacccttgctcagcttgtctacaatgaccagaggatggagaaacagtttgacc |
6572892 |
T |
|
| Q |
201 |
ttaaagcttgggtctatgt |
219 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6572893 |
ttaaagcttgggtccatgt |
6572911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 35139943 - 35140017
Alignment:
| Q |
161 |
cttgtgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtttcagaaacttttgat |
235 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| |||||| |||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
35139943 |
cttgtttacaatgaccataggatacatgagcagtttgaatttaaagcttgggtccatgtttctgaatcttttgat |
35140017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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