View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7136_high_13 (Length: 269)

Name: NF7136_high_13
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7136_high_13
NF7136_high_13
[»] chr6 (50 HSPs)
chr6 (1-251)||(28180951-28181201)
chr6 (1-251)||(28185203-28185453)
chr6 (1-245)||(28234407-28234651)
chr6 (1-251)||(28226787-28227037)
chr6 (1-245)||(28325324-28325568)
chr6 (1-226)||(28242666-28242891)
chr6 (1-246)||(28297813-28298058)
chr6 (1-246)||(28514015-28514260)
chr6 (21-224)||(26342054-26342257)
chr6 (1-232)||(27724945-27725176)
chr6 (6-232)||(28786134-28786360)
chr6 (6-232)||(28792255-28792481)
chr6 (1-232)||(26802298-26802529)
chr6 (1-224)||(26893571-26893794)
chr6 (41-206)||(28491660-28491825)
chr6 (41-206)||(29804070-29804235)
chr6 (1-232)||(27718479-27718710)
chr6 (1-214)||(27611102-27611315)
chr6 (10-224)||(28098478-28098692)
chr6 (20-125)||(27338184-27338289)
chr6 (20-125)||(27398924-27399029)
chr6 (1-170)||(28781057-28781226)
chr6 (69-145)||(27214360-27214436)
chr6 (69-145)||(27234792-27234868)
chr6 (1-125)||(27593120-27593244)
chr6 (69-144)||(26811453-26811528)
chr6 (1-88)||(27678946-27679033)
chr6 (21-232)||(27698614-27698825)
chr6 (20-125)||(25579682-25579787)
chr6 (18-171)||(31284205-31284358)
chr6 (69-145)||(26617269-26617345)
chr6 (21-193)||(26622871-26623043)
chr6 (69-145)||(26723197-26723273)
chr6 (21-193)||(26728849-26729021)
chr6 (20-232)||(27229088-27229300)
chr6 (7-63)||(27706508-27706564)
chr6 (1-232)||(27604805-27605036)
chr6 (1-88)||(27677714-27677801)
chr6 (24-215)||(28139414-28139605)
chr6 (1-63)||(26646504-26646566)
chr6 (1-63)||(26752472-26752534)
chr6 (21-171)||(26861533-26861683)
chr6 (28-125)||(25481705-25481802)
chr6 (20-125)||(26142828-26142933)
chr6 (21-214)||(26884037-26884230)
chr6 (39-228)||(26936954-26937143)
chr6 (94-150)||(26848598-26848654)
chr6 (6-54)||(28149971-28150019)
chr6 (18-169)||(27531314-27531465)
chr6 (96-145)||(26949604-26949653)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-251)||(58382-58632)
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-245)||(34568-34812)
scaffold0038 (1-251)||(27285-27535)
scaffold0038 (1-245)||(116639-116883)
scaffold0038 (1-226)||(42828-43053)
[»] chr2 (2 HSPs)
chr2 (1-221)||(3279555-3279775)
chr2 (69-166)||(17993852-17993949)
[»] scaffold0349 (2 HSPs)
scaffold0349 (6-232)||(3527-3753)
scaffold0349 (1-232)||(14455-14686)
[»] chr4 (6 HSPs)
chr4 (23-226)||(5091076-5091279)
chr4 (1-232)||(18731591-18731822)
chr4 (1-232)||(18724172-18724403)
chr4 (1-232)||(18655564-18655795)
chr4 (1-232)||(18699487-18699718)
chr4 (1-232)||(18679654-18679885)
[»] chr8 (2 HSPs)
chr8 (29-211)||(31903728-31903910)
chr8 (1-125)||(29273870-29273994)
[»] scaffold0277 (2 HSPs)
scaffold0277 (8-232)||(4778-5002)
scaffold0277 (6-170)||(13737-13901)
[»] scaffold1254 (1 HSPs)
scaffold1254 (6-193)||(22-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (6-193)||(7420-7607)
[»] chr5 (1 HSPs)
chr5 (29-232)||(16688867-16689070)
[»] chr1 (1 HSPs)
chr1 (1-125)||(268444-268568)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 50)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 28181201 - 28180951
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  28181201 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaagctctctgtcatc 28181102  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  28181101 catgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaaccataacgagtgtcaccacctctaaagctaaggaacgcgtcatag 28181002  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattgaggcata 251  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  28181001 gtgaatccataggagaaggaagaggatgaggagacggatgattgaagcata 28180951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 28185453 - 28185203
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  28185453 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaagctctctgtcatc 28185354  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  28185353 catgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaacgataacgagtgtcactacctctaaagctaaggaacacgtcatag 28185254  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattgaggcata 251  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  28185253 gtgaatccataggagaaggaagaggatgaggagacggatgattgaagcata 28185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 28234651 - 28234407
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||| || |||||||||||||| ||||||||    
T  28234651 cataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatc 28234552  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  |||||||||||| ||||||||||||| |||||||| | | |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  28234551 aatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcatag 28234452  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattga 245  Q
    ||||||||||||||| | ||||| || | || |||||||||||||    
T  28234451 gtgaatccataggagaaagaagaagagggggggacggatgattga 28234407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 28227037 - 28226787
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||| |||||    
T  28227037 cataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaagctctctatcatc 28226938  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     | ||| ||  | |||||||| | ||||||| | ||  |||||||||||| ||||||||| |||||||||  ||||||||| ||||||||||||||||||    
T  28226937 aaagaatgtgtgaattcccttcttacaaagatcactgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacacgtcatag 28226838  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattgaggcata 251  Q
    ||||||||||| ||| ||||||| |  |  ||||||||||||||| |||||    
T  28226837 gtgaatccataagagaaggaagaagggggagagacggatgattgaagcata 28226787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 28325568 - 28325324
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||| | | ||||||| ||||||| |||||| ||| |||||||    
T  28325568 cataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcgttgaaggtctttgtcatc 28325469  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     |||||||| || |||| |||   ||||||| || |  |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  28325468 aatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcatag 28325369  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattga 245  Q
    ||||||||||||||  |||||||||| || |||| ||||||||||    
T  28325368 gtgaatccataggaaaaggaagaggaggaagagatggatgattga 28325324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28242891 - 28242666
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||  ||||||||| |||| |||||||||||    
T  28242891 cataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttattttgtcacctcctggaagttctctgtcatc 28242792  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     |||||||| || |||||||| | ||||||| || |  |||||||||||| ||||||||| |||||||||| ||||||||| |||||||| || ||||||    
T  28242791 aatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaagacatcatag 28242692  T
Q  201 gtgaatccataggaggaggaagagga 226  Q
    || || |||||||||  |||||||||    
T  28242691 gtaaacccataggagagggaagagga 28242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 28297813 - 28298058
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||||||| |||| ||||| |||||||||||||||| ||||||||||  ||||| |||||||| | ||||||| |||||||||| |||||||||||||||    
T  28297813 cataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcctttaagctctctgtcatc 28297912  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     |||||||| || ||||||||   ||||||| || |   ||||||||||  |||||  ||||| ||||||| ||||||||| || ||||| |||||||      
T  28297913 aatgaaggtgcgaattcccttcctacaaagatctttgtggagatttccaataaaactgtagcgtgtgtcactacctctaaaacttaggaaaacgtcatga 28298012  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattgag 246  Q
    ||||||||||||||| |||||||||| || |||| |||||||||||    
T  28298013 gtgaatccataggagaaggaagaggaggaagagatggatgattgag 28298058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28514260 - 28514015
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||||||| |||| ||||| |||||||||||||||| ||||||||||  ||||| |||||||| | ||||||| |||||||||| |||||||||||||||    
T  28514260 cataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcctttaagctctctgtcatc 28514161  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     |||||||| || ||||||||   ||||||| || |   ||||||||||  |||||  ||||| ||||||| ||||||||| || ||||| |||||||      
T  28514160 aatgaaggtgcgaattcccttcctacaaagatctttgtggagatttccaataaaactgtagcgtgtgtcactacctctaaaacttaggaaaacgtcatga 28514061  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattgag 246  Q
    ||||||||||||||| |||||||||| || |||| |||||||||||    
T  28514060 gtgaatccataggagaaggaagaggaggaagagatggatgattgag 28514015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 26342054 - 26342257
Alignment:
Q  21 ggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccct 120  Q
    |||||||||||||| |||||||||||||| |||| |||||||  | | ||||  |||||||| |||||||| || ||||| |||||||| |||| |||      
T  26342054 ggaatgaaaatcctggactcttcaatggctttgacaagtgattgtgtgattttgtcacctccatgaagctccctatcatcaatgaaggtgcggactccac 26342153  T
Q  121 tgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggagga 220  Q
     |||||| ||||||||| ||| ||| |||| |||||||||||||||| ||   || |||||  | |||||||| ||||| ||||||||||| ||| | ||    
T  26342154 cgtcacatagagctctatagatattgccagtaaaaccatagcgagtgccaatgcccctaaaattgaggaacacatcatatgtgaatccatatgagaatga 26342253  T
Q  221 agag 224  Q
    ||||    
T  26342254 agag 26342257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 27724945 - 27725176
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  |||||||    
T  27724945 catagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatc 27725044  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  ||||||  |  |||||||||| | |||||| |  |||||||||   || ||||| ||||||||||| |  ||     
T  27725045 aatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaa 27725144  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    ||||||||||||||  | ||||||||||||||    
T  27725145 gtgaatccataggaaaatgaagaggatgagga 27725176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 28786360 - 28786134
Alignment:
Q  6 ttgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatga 105  Q
    |||||||| || || ||||| ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||    
T  28786360 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 28786261  T
Q  106 aggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaa 205  Q
    |||||  |||||||||||||  ||||||  |  |||||||||| | |||||| | ||||||||||   || ||||| || |||||||| |  || |||||    
T  28786260 aggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaa 28786161  T
Q  206 tccataggaggaggaagaggatgagga 232  Q
    |||||||||  | ||||||||||||||    
T  28786160 tccataggaaaatgaagaggatgagga 28786134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 28792481 - 28792255
Alignment:
Q  6 ttgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatga 105  Q
    |||||||| || || ||||| ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||    
T  28792481 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 28792382  T
Q  106 aggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaa 205  Q
    |||||  |||||||||||||  ||||||  |  |||||||||| | |||||| | ||||||||||   || ||||| || |||||||| |  || |||||    
T  28792381 aggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaa 28792282  T
Q  206 tccataggaggaggaagaggatgagga 232  Q
    |||||||||  | ||||||||||||||    
T  28792281 tccataggaaaatgaagaggatgagga 28792255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26802529 - 26802298
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| ||||| ||||| ||||||||||||||||| ||||||| | | ||||| || |||| |||||| ||  |||||||    
T  26802529 catagttgatagaaaacacaggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcattgtcatc 26802430  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  ||||||  |  ||||||| || | |||||| || |||||||||   || ||||| || |||||||| |  ||     
T  26802429 aatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaa 26802330  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    ||||||||||| ||  | ||||||||||||||    
T  26802329 gtgaatccataagaaaatgaagaggatgagga 26802298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26893571 - 26893794
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| | ||| |||||| | ||| ||||||||||||| |||||||||||||||| |   ||||| |||||||  ||||||||| | |||||    
T  26893571 catagttgatagagaggactggaatgtatatcatagactcttcaattgccttgataagtgatggtgagatttcgtcacctctatgaagctctgtatcatc 26893670  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  | |||||  | |||||||||||| || | ||||  || | ||||||| | |||||||||   ||||||||  | ||||| || || |||    
T  26893671 aatgaaggtgtgaattccactatcacaaagagctttataaagatgacccgtaaaaccaaaacgagtgtcagagcctctaaaattgaggaagacatcgtag 26893770  T
Q  201 gtgaatccataggaggaggaagag 224  Q
    ||||||||||| ||||||||||||    
T  26893771 gtgaatccatacgaggaggaagag 26893794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 28491660 - 28491825
Alignment:
Q  41 ttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacag 140  Q
    ||||||||| ||||| ||||||| | | ||||||||||||  |||||||||   ||| |||||||| || |||| ||| ||||||   |||||| | ||     
T  28491660 ttcaatggctttgatgagtgatggtgtgatttcttcacctttttgaagctcctcgtcgtccatgaaagtacggactcctttgtcatggagagctttccat 28491759  T
Q  141 agatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaat 206  Q
    ||||||||||  ||||| |||||||| ||  |||||| ||||||||||||||| ||||||||||||    
T  28491760 agatttccagtgaaaccgtagcgagtatcctcacctcgaaagctaaggaacacatcataggtgaat 28491825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 29804070 - 29804235
Alignment:
Q  41 ttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacag 140  Q
    ||||||||| ||||| ||||||| | | ||||||||||||  |||||||||   ||| |||||||| || |||| ||| ||||||   |||||| | ||     
T  29804070 ttcaatggctttgatgagtgatggtgtgatttcttcacctttttgaagctcctcgtcgtccatgaaagtacggactcctttgtcatggagagctttccat 29804169  T
Q  141 agatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaat 206  Q
    ||||||||||  ||||| |||||||| ||  |||||| ||||||||||||||| ||||||||||||    
T  29804170 agatttccagtgaaaccgtagcgagtatcctcacctcgaaagctaaggaacacatcataggtgaat 29804235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 27718479 - 27718710
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  |||||||    
T  27718479 catagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatc 27718578  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  ||||||  |  |||||||||| | |||||  |  |||||||||   || ||||| || |||||||| |  ||     
T  27718579 aatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacacttggtaa 27718678  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    |||||||||| |||| | ||||||||||||||    
T  27718679 gtgaatccatgggagaatgaagaggatgagga 27718710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 27611102 - 27611315
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| | |||| ||  |||||||    
T  27611102 catagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatc 27611201  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  ||||||  |  |||||||||| | |||||| | ||||||||||   || ||||| || |||||||| |  ||     
T  27611202 aatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaa 27611301  T
Q  201 gtgaatccatagga 214  Q
    ||||||||||||||    
T  27611302 gtgaatccatagga 27611315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 28098478 - 28098692
Alignment:
Q  10 tagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggt 109  Q
    |||| ||||| ||||| |||||||| |||||||| |||||||||| ||| |||  | | |||   |||||| | ||||| ||| | |  || ||||||||    
T  28098478 tagagaagaccggaattaaaatcctggactcttcgatggccttgacaagggattgtgtgattctatcaccttcatgaagatctttatggtcaatgaaggt 28098577  T
Q  110 tcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatcca 209  Q
     |||| |||   ||||||||||||| |  |||||||||||| ||||||||| ||||||||    || |||||  |||| |||||||||||||||||||||    
T  28098578 gcggactcctccgtcacaaagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcataggtgaatcca 28098677  T
Q  210 taggaggaggaagag 224  Q
    || ||| | ||||||    
T  28098678 taagagaatgaagag 28098692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 27338184 - 27338289
Alignment:
Q  20 gggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccc 119  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | |  |||| || |||| || ||| ||  ||||||| |||||||||  |||||||    
T  27338184 gggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattccc 27338283  T
Q  120 ttgtca 125  Q
    ||||||    
T  27338284 ttgtca 27338289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 27398924 - 27399029
Alignment:
Q  20 gggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccc 119  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | |  |||| || |||| || ||| ||  ||||||| |||||||||  |||||||    
T  27398924 gggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattccc 27399023  T
Q  120 ttgtca 125  Q
    ||||||    
T  27399024 ttgtca 27399029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 28781226 - 28781057
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  |||||||    
T  28781226 catagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatc 28781127  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtca 170  Q
     |||||||||  |||||||||||||  ||||||  |  ||||||| || | |||||| | ||||||||||    
T  28781126 aatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtca 28781057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 27214436 - 27214360
Alignment:
Q  69 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 145  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||||||| ||||||||||||||| || |||||||    
T  27214436 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagatt 27214360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 27234792 - 27234868
Alignment:
Q  69 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 145  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||||||| ||||||||||||||| || |||||||    
T  27234792 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagatt 27234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 27593120 - 27593244
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| |||||||||||||||||||||||||||| |||||||| | | ||||| |  |||| ||||||  |  |||||||    
T  27593120 catagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatttcctctttgaagaccattgtcatc 27593219  T
Q  101 catgaaggttcggattcccttgtca 125  Q
     ||||||||   |||||||||||||    
T  27593220 aatgaaggtgttgattcccttgtca 27593244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 26811528 - 26811453
Alignment:
Q  69 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagat 144  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||||||| ||||||||||||||| || ||||||    
T  26811528 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagat 26811453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27679033 - 27678946
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaag 88  Q
    |||| |||||||| || || ||||| |||||||||||||||||||||||||||| |||||||| | | ||||| || |||| ||||||    
T  27679033 catagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctcctctttgaag 27678946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 27698614 - 27698825
Alignment:
Q  21 ggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccct 120  Q
    ||||| ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  |||||||||    
T  27698614 ggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattccct 27698713  T
Q  121 tgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggagga 220  Q
    |||||  ||||||  |  |||||||||| | |||||| |  |||||||||   || ||||| || | |||||| |  || ||||||||||||||  | ||    
T  27698714 tgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatga 27698813  T
Q  221 agaggatgagga 232  Q
    || |||||||||    
T  27698814 agtggatgagga 27698825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 25579787 - 25579682
Alignment:
Q  20 gggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccc 119  Q
    |||||| ||||||||||| |||||||||||||||| |||||||| | | ||||| || |||| |||||| ||  | ||||| | |||||| || ||||||    
T  25579787 gggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatcattatcatcaaagaaggtacgaattccc 25579688  T
Q  120 ttgtca 125  Q
    ||||||    
T  25579687 ttgtca 25579682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 31284358 - 31284205
Alignment:
Q  18 acgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattc 117  Q
    ||||| || ||||||||||||||||||||||| |||   ||||||| | | ||||| || |||| |||||| || || ||||| ||||||||  ||||||    
T  31284358 acggggataaaaatcctagactcttcaatggcattgtcgagtgatggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattc 31284259  T
Q  118 ccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcac 171  Q
    ||||||||  ||||||  |  ||||||| || |  |||||||| ||||||||||    
T  31284258 ccttgtcagtaagagccttgtagagattgccggtgaaaccataccgagtgtcac 31284205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 26617345 - 26617269
Alignment:
Q  69 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 145  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||| ||| ||||||||||||||| || |||||||    
T  26617345 atttcatcacctctctgaagctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagatt 26617269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 26623043 - 26622871
Alignment:
Q  21 ggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccct 120  Q
    ||||| ||||||||||||||||| || || |||  |||||||| | | ||||| || |||| |||||| || |  ||||| ||||||||  |||||||||    
T  26623043 ggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattccct 26622944  T
Q  121 tgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacac 193  Q
    |||||  ||||||  |  ||||||||||||  ||||| || ||||||||||  ||||| || || ||||||||    
T  26622943 tgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacac 26622871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 26723273 - 26723197
Alignment:
Q  69 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 145  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||| ||| ||||||||||||||| || |||||||    
T  26723273 atttcatcacctctctgaagctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagatt 26723197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 26729021 - 26728849
Alignment:
Q  21 ggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccct 120  Q
    ||||| ||||||||||||||||| || || |||  |||||||| | | ||||| || |||| |||||| || |  ||||| ||||||||  |||||||||    
T  26729021 ggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattccct 26728922  T
Q  121 tgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacac 193  Q
    |||||  ||||||  |  ||||||||||||  ||||| || ||||||||||  ||||| || || ||||||||    
T  26728921 tgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacac 26728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 27229300 - 27229088
Alignment:
Q  20 gggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccc 119  Q
    |||||| ||||||| ||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  ||||||||    
T  27229300 gggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcctctttgaagatcattgtcatcaatgaaggtatggattccc 27229201  T
Q  120 ttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggagg 219  Q
    ||||||  ||||||  |  ||||||| || | |||||| |  |||||||||   || ||||| ||||||||||| |  || ||||||||| ||||  | |    
T  27229200 ttgtcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatg 27229101  T
Q  220 aagaggatgagga 232  Q
    ||||||| |||||    
T  27229100 aagaggaagagga 27229088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 27706508 - 27706564
Alignment:
Q  7 tgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatg 63  Q
    ||||||| || || ||||| |||||||||||||||||||||||||||| ||||||||    
T  27706508 tgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatg 27706564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 27604805 - 27605036
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| |||||||| || || ||||||||||||| ||||| || | | ||||| || |||| | |||| ||  | |||||    
T  27604805 catatttgatagaaaacacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctcctcttcgaagatcattttcatc 27604904  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  | ||||||||||||  ||||||  |  ||||||| || | |||||| || |||||||||   || ||||| ||||||||||| |  ||     
T  27604905 aatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaa 27605004  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    |||||| |||||||  | ||||||||||||||    
T  27605005 gtgaatgcataggaaaatgaagaggatgagga 27605036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27677714 - 27677801
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaag 88  Q
    |||| |||||||| || || | ||| |||||||||||||||||||||||||||| |||||||| | | ||||| || |||| ||||||    
T  27677714 catagttgatagaaaacacagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaag 27677801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 28139605 - 28139414
Alignment:
Q  24 atgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgt 123  Q
    |||||||||||||| ||||||||||| || |  ||||| | |  |||||| ||||||||||||||||| || ||||| || || ||  |||||||   ||    
T  28139605 atgaaaatcctagattcttcaatggcttttacgagtgacggtgatatttcgtcacctccttgaagctccctatcatcaataaaagtgtggattccacagt 28139506  T
Q  124 cacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggag 215  Q
    ||| ||||||| |  ||||||||||||  |||||  | ||||||||||  ||||| ||||| || || || || || ||||| |||||||||    
T  28139505 cacgaagagctttgtagagatttccagtgaaaccgaaacgagtgtcactgcctctgaagctgagaaagacatcgtatgtgaagccataggag 28139414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26646566 - 26646504
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatg 63  Q
    |||| |||||||| || || ||||| ||||||||||| ||||||||||||||||| |||||||    
T  26646566 catagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatg 26646504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26752534 - 26752472
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatg 63  Q
    |||| |||||||| || || ||||| ||||||||||| ||||||||||||||||| |||||||    
T  26752534 catagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatg 26752472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 26861683 - 26861533
Alignment:
Q  21 ggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccct 120  Q
    ||||||||||| ||||||||||||||||| |||   ||||||  | | ||||| || |||| |||||| || |  ||||||||||||||  | |||||||    
T  26861683 ggaatgaaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccct 26861584  T
Q  121 tgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcac 171  Q
    |||||  ||||||  |  ||||||| || | ||||||||| ||||||||||    
T  26861583 tgtcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcac 26861533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 25481802 - 25481705
Alignment:
Q  28 aaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 125  Q
    |||||||||| |||||||||||||||| |||||||| | | ||||| || |||| |||||| ||  | ||||| ||||| || || ||||||||||||    
T  25481802 aaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtca 25481705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 26142933 - 26142828
Alignment:
Q  20 gggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccc 119  Q
    |||||| ||||||||||| |||||||||||||||| |||||||| | | ||||| || |||| || ||| ||  | ||||| ||||| || || ||||||    
T  26142933 gggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacgaattccc 26142834  T
Q  120 ttgtca 125  Q
    ||||||    
T  26142833 ttgtca 26142828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 26884230 - 26884037
Alignment:
Q  21 ggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattccct 120  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||||| | | |||||    |||| | |||| |   | ||||| ||||||||  |||||||||    
T  26884230 ggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcgcttcctcttggaagatgattatcatcaatgaaggtgtggattccct 26884131  T
Q  121 tgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccatagga 214  Q
    ||| |  ||||||  |  ||||||||||||  |||||||| ||||||||||  ||||| || || |||||||| |  || ||||||||||||||    
T  26884130 tgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacacttggtaagtgaatccatagga 26884037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 26937143 - 26936954
Alignment:
Q  39 tcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctac 138  Q
    |||||||| ||||||| |||||||| | | |||||||| ||||| || |||||  ||||||| |||||||| || |||||    |||||||||||| |      
T  26937143 tcttcaattgccttgacaagtgatggtgtgatttcttctcctccatggagctccttgtcatcaatgaaggtgcgaattccacaatcacaaagagctttgt 26937044  T
Q  139 agagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatg 228  Q
    | ||||  |||  ||||    ||||||||||    ||||| || || |||||||||||||||||||||||||| ||| ||||||| ||||    
T  26937043 aaagatgaccaataaaatggaagcgagtgtcggtgcctctgaaactgaggaacacgtcataggtgaatccataagagaaggaagatgatg 26936954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 26848654 - 26848598
Alignment:
Q  94 tgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatttccag 150  Q
    ||||||| ||||||||||||||||| |||||| |||||||| || ||||||| ||||    
T  26848654 tgtcatcaatgaaggttcggattccattgtcagaaagagctttatagagattaccag 26848598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 28150019 - 28149971
Alignment:
Q  6 ttgatagacaagacgggaatgaaaatcctagactcttcaatggccttga 54  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||||    
T  28150019 ttgatagagaagattggaatgaaaatcctggactcttcaatggccttga 28149971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 27531314 - 27531465
Alignment:
Q  18 acgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattc 117  Q
    |||||||| ||||||||||| | ||||||||| ||  | ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||   |||||    
T  27531314 acgggaataaaaatcctagatttttcaatggcattttttagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatagattc 27531413  T
Q  118 ccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtc 169  Q
    ||||||||  ||||||  |  |||||||||| | |||||| | |||||||||    
T  27531414 ccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtc 27531465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 26949653 - 26949604
Alignment:
Q  96 tcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 145  Q
    ||||| |||||||||||||||||||||||| | |||||| || |||||||    
T  26949653 tcatcaatgaaggttcggattcccttgtcagagagagctttatagagatt 26949604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 58382 - 58632
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||| ||||||||||||||||||||||||||    
T  58382 catagttgatagacaagacgggaatgaaaatcctagactctttaatggccttgaaaagtgatggtgttatttcgtcacctccttgaagctctctgtcatc 58481  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  58482 catgaaggttcggattcccttgtcacaaagagctctgtagagatttccagtaaaaccatagcgagtgtcacaacctctaaagctaaggaacacgtgatag 58581  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattgaggcata 251  Q
    ||||||||||||||| |||||||||| || |||| |||||||||| |||||    
T  58582 gtgaatccataggagaaggaagaggaggaagagatggatgattgaagcata 58632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 34812 - 34568
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||| || |||||||||||||| ||||||||    
T  34812 cataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatc 34713  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  |||||||||||| ||||||||||||| |||||||| | | |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  34712 aatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcatag 34613  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattga 245  Q
    ||||||||||||||| | ||||| || | || |||||||||||||    
T  34612 gtgaatccataggagaaagaagaagagggggggacggatgattga 34568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 27535 - 27285
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||| |||||    
T  27535 cataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaagctctctatcatc 27436  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     | ||| ||  | |||||||| | ||||||| | ||  |||||||||||| ||||||||| |||||||||  ||||||||| ||||||||||||||||||    
T  27435 aaagaatgtgtgaattcccttcttacaaagatcactgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacacgtcatag 27336  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattgaggcata 251  Q
    ||||||||||| ||| ||||||| |  |  ||||||||||||||| |||||    
T  27335 gtgaatccataagagaaggaagaagggggagagacggatgattgaagcata 27285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 116883 - 116639
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||| | | ||||||| ||||||| |||||| ||| |||||||    
T  116883 cataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcgttgaaggtctttgtcatc 116784  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     |||||||| || |||| |||   ||||||| || |  |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  116783 aatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcatag 116684  T
Q  201 gtgaatccataggaggaggaagaggatgaggagacggatgattga 245  Q
    ||||||||||||||  |||||||||| || |||| ||||||||||    
T  116683 gtgaatccataggaaaaggaagaggaggaagagatggatgattga 116639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43053 - 42828
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||  ||||||||| |||| |||||||||||    
T  43053 cataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttattttgtcacctcctggaagttctctgtcatc 42954  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     |||||||| || |||||||| | ||||||| || |  |||||||||||| ||||||||| |||||||||| ||||||||| |||||||| || ||||||    
T  42953 aatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaagacatcatag 42854  T
Q  201 gtgaatccataggaggaggaagagga 226  Q
    || || |||||||||  |||||||||    
T  42853 gtaaacccataggagagggaagagga 42828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3279775 - 3279555
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| ||||| ||||| |||||| | |||||||| |||||||||| |||||||  | | ||||| |||||||| |||||||| || |||||    
T  3279775 catagttgatagagaagaccggaataaaaatcatggactcttcgatggccttgacaagtgattgtgtgatttcatcacctccatgaagctccctatcatc 3279676  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     |||||||| | || |||   |||||  | ||||||| |||||||||||| |||||||||||||||||||   || ||||| || | ||| |||||||||    
T  3279675 aatgaaggtgcagaatccaccgtcacttaaagctctatagagatttccagtaaaaccatagcgagtgtcagtgcccctaaaactcaagaatacgtcatag 3279576  T
Q  201 gtgaatccataggaggaggaa 221  Q
    ||||||||||| ||| |||||    
T  3279575 gtgaatccataagagaaggaa 3279555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 17993852 - 17993949
Alignment:
Q  69 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagt 166  Q
    ||||| |||||||  ||||||||| ||||||| ||||||||||| |||||||||||| |||||||| || ||||||| || |  |||||||| |||||    
T  17993852 atttcatcacctctctgaagctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatcgagt 17993949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 3527 - 3753
Alignment:
Q  6 ttgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatga 105  Q
    |||||||| || || ||||| ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||    
T  3527 ttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 3626  T
Q  106 aggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaa 205  Q
    ||||  ||||||||||||||  ||||||  |  |||||||||| | |||||| |  |||||||||   || ||||| ||||||||||| |  || |||||    
T  3627 aggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaa 3726  T
Q  206 tccataggaggaggaagaggatgagga 232  Q
    |||||||||  | ||||||||||||||    
T  3727 tccataggaaaatgaagaggatgagga 3753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 14455 - 14686
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  |||||||    
T  14455 catagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatc 14554  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  ||||||  |  |||||||||| | |||||| |  |||||||||   || ||||| || | |||||| |  ||     
T  14555 aatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaa 14654  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    ||||||||||||||  | |||| |||||||||    
T  14655 gtgaatccataggaaaatgaagtggatgagga 14686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 5091076 - 5091279
Alignment:
Q  23 aatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttg 122  Q
    ||||| |||| |||| |||| ||||||||||| |||||| | | ||||||  || ||||  ||||||||||||||||| ||||||||  | |||||||||    
T  5091076 aatgacaatcttagattcttgaatggccttgagaagtgacggtgttatttggtctcctcgctgaagctctctgtcatcaatgaaggtgtgaattcccttg 5091175  T
Q  123 tcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaag 222  Q
     |||  ||||||  | |||||||||||| |||||| || ||||||||    |||||||| ||||| || ||||| ||||| ||||| |||||| | ||||    
T  5091176 acacgtagagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctctaaaactaagaaagacgtcgtaggtaaatccgtaggagaaagaag 5091275  T
Q  223 agga 226  Q
    ||||    
T  5091276 agga 5091279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18731591 - 18731822
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || |||||||| |||||||||||||||||||| |||   ||||||| | | ||||| || |||| ||| || || | ||||||    
T  18731591 catagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacggtcatc 18731690  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  |||||||||  ||||||  |||| |||||| |  ||||||||||  || || ||||| |||||||| |  ||     
T  18731691 aatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtaa 18731790  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    ||||||| ||||||  | ||||||||||||||    
T  18731791 gtgaatcgataggaaaatgaagaggatgagga 18731822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18724172 - 18724403
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || |||||||| |||||||||||||||||||| |||   ||||||| | | ||||| || |||| ||| || || | ||||||    
T  18724172 catagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacggtcatc 18724271  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  ||||||  |  ||||||  |||| |||||| |  ||||||||||  || || ||||| |||||||| |  ||     
T  18724272 aatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaa 18724371  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    ||||||| ||||||  | ||||||||||||||    
T  18724372 gtgaatcgataggaaaatgaagaggatgagga 18724403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18655564 - 18655795
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| || ||||||||||||| |||||| |||   ||||||| | | ||||| || || | ||| ||||| | ||||||    
T  18655564 catagttgatagaaaacacaggaataaagatcctagactcttgaatggcattgtcgagtgatggtttgatttcatccccactttgcagctcacggtcatc 18655663  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  ||||||| |  ||||||  |||| |||||| |  ||||||||||  || || ||||| |||||||| |  ||     
T  18655664 aatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaa 18655763  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    ||||||| ||||||  | ||||||||||||||    
T  18655764 gtgaatcgataggaaaatgaagaggatgagga 18655795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18699487 - 18699718
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || |||||||| |||||||||||||||||||| |||   ||||||| | | ||||| || || | ||| || || | ||||||    
T  18699487 catagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatccccactttgcaggtcacggtcatc 18699586  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||||||||||  ||||||| |  ||||||  |||| |||||| |  |||||||||   || || ||||| |||||||| |  ||     
T  18699587 aatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacacttggtaa 18699686  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    ||||||| ||||||  | ||||||||||||||    
T  18699687 gtgaatcgataggaaaatgaagaggatgagga 18699718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18679654 - 18679885
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || |||||||| |||||||||||||||||||| |||   ||||||| | | ||||| || |||| ||| || || | ||||||    
T  18679654 catagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacggtcatc 18679753  T
Q  101 catgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcatag 200  Q
     ||||||||  ||||||| ||||||  ||||||  |  ||||||  |||| |||||| |  ||||||||||  || || ||||| |||||||| |  ||     
T  18679754 aatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaa 18679853  T
Q  201 gtgaatccataggaggaggaagaggatgagga 232  Q
    ||||||| ||||||  | |||||| |||||||    
T  18679854 gtgaatcgataggaaaatgaagagaatgagga 18679885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 31903910 - 31903728
Alignment:
Q  29 aatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaa 128  Q
    |||||||||||||||||| ||||  | |||||||| | | ||||| |  |||| |||||| |||   || || || |||||  |||||||||| ||| ||    
T  31903910 aatcctagactcttcaattgcctctaaaagtgatggtgtgatttcatgtcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataa 31903811  T
Q  129 agagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccata 211  Q
    |||||| |  |||||||||||| ||||||||||||||||||    ||||||||||| |||||||| || ||||||||||||||    
T  31903810 agagctttgtagagatttccagtaaaaccatagcgagtgtctaagcctctaaagctgaggaacacatcgtaggtgaatccata 31903728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 29273870 - 29273994
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| ||||| ||||||||||||||| | |||   ||||||||| | ||||| || |||| |||||| || |  |||||    
T  29273870 catagttgatagaaaacacaggaataaaaattctagactcttcaatgacattgtcgagtgatgatttgatttcatcccctctttgaagttcacgatcatc 29273969  T
Q  101 catgaaggttcggattcccttgtca 125  Q
     ||||||||  ||||||||||||||    
T  29273970 aatgaaggtgtggattcccttgtca 29273994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 4778 - 5002
Alignment:
Q  8 gatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaag 107  Q
    |||||| || || ||||| ||||||||||| || ||||||||||||   || |||| | | ||||| || |||| |||||| ||  ||||||| ||||||    
T  4778 gatagaaaacacaggaataaaaatcctagattcatcaatggccttgcggagggatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaag 4877  T
Q  108 gttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatc 207  Q
    |||  |||||||||||||  ||||||  |  |||||||||| | |||||| | ||||||||||   || ||||| || |||||||| |  || |||||||    
T  4878 gttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatc 4977  T
Q  208 cataggaggaggaagaggatgagga 232  Q
    |||||||  | ||||||||||||||    
T  4978 cataggaaaatgaagaggatgagga 5002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 13737 - 13901
Alignment:
Q  6 ttgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatga 105  Q
    |||||||| || || ||||| ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||    
T  13737 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 13836  T
Q  106 aggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtca 170  Q
    |||||  |||||||||||||  ||||||  |  ||||||| || | |||||| | ||||||||||    
T  13837 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtca 13901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 22 - 209
Alignment:
Q  6 ttgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatga 105  Q
    |||||||| || || ||||| ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||    
T  22 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 121  T
Q  106 aggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacac 193  Q
    |||||  |||||||||||||  ||||||  |  ||||||| || | |||||| | ||||||||||   || ||||| |||||||||||    
T  122 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 7607 - 7420
Alignment:
Q  6 ttgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatga 105  Q
    |||||||| || || ||||| ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||    
T  7607 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 7508  T
Q  106 aggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacac 193  Q
    |||||  |||||||||||||  ||||||  |  ||||||| || | |||||| | ||||||||||   || ||||| |||||||||||    
T  7507 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 7420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 16689070 - 16688867
Alignment:
Q  29 aatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaa 128  Q
    |||||| || |||||||| |||||||||||||||| | | ||||  |||||||  ||||| ||  ||||||| ||||||   |||||||||||||||||     
T  16689070 aatccttgagtcttcaattgccttgataagtgatggtgtgattttgtcacctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacat 16688971  T
Q  129 agagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatg 228  Q
    |||||| |  | ||||| |||| ||||  | ||||||||||| | || | |||  | ||||| || |||||| ||||||| |||||| |||| ||||| |    
T  16688970 agagctttgtacagattaccagtaaaatgaaagcgagtgtcatcgccacaaaaatttaggaaaacatcatagttgaatccgtaggagaaggatgaggaag 16688871  T
Q  229 agga 232  Q
    ||||    
T  16688870 agga 16688867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 268444 - 268568
Alignment:
Q  1 cataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatc 100  Q
    |||| |||||||| || || ||||| ||||||||||||||||||||||| |||   ||||||| | | ||||| || |||| |||||| || |  |||||    
T  268444 catagttgatagaaaacacaggaataaaaatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgaagttcacgatcatc 268543  T
Q  101 catgaaggttcggattcccttgtca 125  Q
     ||||||||  ||||||||||||||    
T  268544 aatgaaggtgtggattcccttgtca 268568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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