View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7136_low_1 (Length: 919)
Name: NF7136_low_1
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7136_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 866; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 17 - 898
Target Start/End: Complemental strand, 43829427 - 43828546
Alignment:
| Q |
17 |
cccggctgataagagacaggtttttcacaaagagcttaagagggtatgttccgaaggagcacaagtgttgcgcgaacttggaaacaaagtccagaagatg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43829427 |
cccggctgataagagacaggtttttcacaaagagcttaagagggtatgttccgaaggagcacaagtgttgcgcgaacttggaaacaaagtccagaagatg |
43829328 |
T |
|
| Q |
117 |
gagaagctggacaggagagatttgttgcacaaagtgcacgaggcagccgaagaattgcaactaaagatcgataaaaaatcttaccttcttgtcaattcag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43829327 |
gagaagctggacaggagagatttgttgcacaaagtgcacgaggcagccgaagaattgcaactaaagatcgataaaaaatcttaccttcttgtcaattcag |
43829228 |
T |
|
| Q |
217 |
agctctgggaaatcggaaaccattctagagaggaaactgatgatgatcttcctgaaggccacattaacatggatgaagataaacaatttctagagtacaa |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43829227 |
agctctgggaaattggaaaccattctagagaggaaactaatgatgatcttcctgaaggccacattaacatggatgaagacaaacaatttctagagtacaa |
43829128 |
T |
|
| Q |
317 |
gtctctaagtgaagcagcacttgatctcagatcaattgaagttcaaaacaattgggatgaaataactagagataataatagtaataaccatgatgtgcct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43829127 |
gtctctaagtgaagcagcacttgatctcagatcaattgaagttcaaaacaattgggatgaaataactagagataataatagtaataaccatgatgtgcct |
43829028 |
T |
|
| Q |
417 |
ccttctatcgccaatgaaaacatgttcgtgaaacaaacatcttggcctgctcatgtttactacaaaccagaagtcaaagcaaaagaggaagtatcaaaaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43829027 |
ccttctatcgccaatgaaaacatgttcgtgaaacaaacatcttggcctgctcatgtttactacaaaccagaagtcaaagcaaaagaggaagtatcaaaaa |
43828928 |
T |
|
| Q |
517 |
cttatgaaagtgcaagttcgttgtctctaacgacatttacatcactattgattgaatttgtagcaaggcttcaaaatttagtggattcatttgaagaatt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43828927 |
cttatgaaagtgcaagttcgttgtctctaacgacatttacatcactattgattgaatttgtagcaaggcttcaaaatttagtggattcatttgaagaatt |
43828828 |
T |
|
| Q |
617 |
gggtgagaaagctaactttaaggacccccttgaacaacaaggtgccatagcatctggctggtttaggaggagattgtttaactgctttatatcccaggat |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43828827 |
gggtgagaaagctaactttaaggacccccttgaacaacaaggtgccatagcatctggctggtttaggaggagattgtttaactgctttatatcccaggat |
43828728 |
T |
|
| Q |
717 |
tgacaaatggagtatgaaaagaggtaaattttcttaacaagtagatcaactccagaaatttccataaagttttgaaactatttgatatttcatcatgtga |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43828727 |
tgacaaatggagtatgaaaagaggtaaattttcttaacaagtagatcaactccagaaatttccataaagttttgaaactatttgatatttcatcatgtga |
43828628 |
T |
|
| Q |
817 |
catcaaatggacttataaaaatgttttaaaaatgatcagaagtgaacctaaagacgacggcaaagttggttggatgcagcgg |
898 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43828627 |
catcaaatggactcataaaaatgttttaaaaatgatcagaagtgaacctaaagacgacggcaaagttggttggatgcagcgg |
43828546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 21 - 860
Target Start/End: Complemental strand, 43821954 - 43821118
Alignment:
| Q |
21 |
gctgataagagacaggtttttcacaaagagcttaagagggtatgttccgaaggagcacaagtgttgcgcgaacttggaaacaaagtccagaagatggaga |
120 |
Q |
| |
|
||||| |||||||| ||||| | ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
43821954 |
gctgagaagagacatgttttcctcaatgagcttaagagggtaggttccgaaggagcaagagtgttgcgcgaacttggaaacaaagtaaaaaagatggaga |
43821855 |
T |
|
| Q |
121 |
agctggacaggagagatttgttgcacaaagtgcacgaggcagccgaagaattgcaactaaagatcgataaaaaatcttaccttcttgtcaattcagagct |
220 |
Q |
| |
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| || ||||| |||||||| || | || ||||||||||| |||||||| |||| |||||||||||||||||||||||| ||||| || |||||||| |
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| T |
43821854 |
aactagacagaggagatttgctgtttgatgtacacgaggcagcagaagaattacaacaaaagatcgataaaaaatcttacctccttgtaaactcagagct |
43821755 |
T |
|
| Q |
221 |
ctgggaaatcggaaaccattctagagaggaaactgatgatgatcttcctgaaggccacattaacatggatgaagataaacaatttctagagtacaagtct |
320 |
Q |
| |
|
|||||| |||||||||| | | ||||| |||| | ||||||||| |||| |||||| || ||||||||||||||| | |||||||||||||||||||| |
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| T |
43821754 |
ctgggagatcggaaaccgtccaagagatgaaagtaatgatgatcatcctaaaggcctatttcacatggatgaagatagaaaatttctagagtacaagtct |
43821655 |
T |
|
| Q |
321 |
ctaagtgaagcagcacttgatctcagatcaattgaagttcaaaacaattgggatgaaataactagagataataatagtaataaccatgatgtgcctcctt |
420 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
43821654 |
ctaagtgaagcagtacttgatcttagatcaattgaagttcaaaacaattgggatgaaaaaactacagatgataatagtaataaccatgatgtgcctcct- |
43821556 |
T |
|
| Q |
421 |
ctatcgccaatgaaaacatgttcgtgaaacaaacatcttggcctgctcatgtttactacaaaccagaagtcaaagcaaaagaggaagtatcaaaaactta |
520 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43821555 |
--attgccaatgaaaacatgtttgtgaaacaaatgtcttggcctgctcatgtttactacaaaccagaagtcaaagcaaaagaggaagaatcaaaaactta |
43821458 |
T |
|
| Q |
521 |
tgaaagtgcaagttcgttgtctctaacgacatttacatcactattgattgaatttgtagcaaggcttcaaaatttagtggattcatttgaagaattgggt |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43821457 |
tgaaagtgcaagttcgttgtctctaacgacatttacatcacttctgatagaatttgtagcaaggcttcaaaatttagtggactcatttgaagaattgggt |
43821358 |
T |
|
| Q |
621 |
gagaaagctaactttaaggacccccttgaacaacaaggtgccatagcatctggctggtttaggaggagattgtttaactgctttatatcccaggattgac |
720 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| || | || |||||| ||||| ||| ||||||||||||| ||| | |||| ||||||||| |
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|
| T |
43821357 |
gagaaagctaattttaaggacccccttgaaaaacaaggcgcggtggcctctggcgggttttggacaagattgtttaactacttcagatcctaggattgac |
43821258 |
T |
|
| Q |
721 |
aaatggagtatgaaaagaggtaaattttcttaacaagtagatcaactccagaaatttccataaagttttgaaactatttgatatttcatcatgtgacatc |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| |||||| || ||| ||||||||| |||||| | ||||||| || || || |
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|
| T |
43821257 |
aaatggagtatgaaaagaggtaaattttcttattgagtaaatcaactccgcaaattttcaaaaacttttgaaacaatttgacacttcatcaagtaacttc |
43821158 |
T |
|
| Q |
821 |
aaatggacttataaaaatgttttaaaaatgatcagaagtg |
860 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||| |
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|
| T |
43821157 |
aaatagacttatgaaaatgttttaaaaatgatccgaagtg |
43821118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 21 - 733
Target Start/End: Complemental strand, 43814656 - 43813959
Alignment:
| Q |
21 |
gctgataagagacaggtttttcacaaagagcttaagagggtatgttccgaaggagcacaagtgttgcgcgaacttggaaacaaagtccagaagatggaga |
120 |
Q |
| |
|
||||| || ||||||||||||| ||| ||||| ||||||||| ||| ||||||||| |||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
43814656 |
gctgagaaaagacaggtttttcgcaatgagctgaagagggtaggttttgaaggagcaaaagtgttgcgcgaactaggaaacaaagtcaagaagatggaga |
43814557 |
T |
|
| Q |
121 |
agctggacaggagagatttgttgcacaaagtgcacgaggcagccgaagaattgcaactaaagatcgataaaaaatcttaccttcttgtcaattcagagct |
220 |
Q |
| |
|
| || |||||| ||||||||||| | |||| || || ||||| |||||||| |||| |||||||||||||||||| ||||| ||||| ||||||||| | |
|
|
| T |
43814556 |
aactagacaggggagatttgttgtatgaagtacatgaagcagctgaagaattacaacaaaagatcgataaaaaatcgtacctccttgtaaattcagagtt |
43814457 |
T |
|
| Q |
221 |
ctgggaaatcggaaaccattctagagaggaaactgatgatgatcttcctgaaggccacattaacatggatgaagataaacaatttctagagtacaagtct |
320 |
Q |
| |
|
||||||||||||||| | | ||||||| |||| ||||||||| ||| |||||| | || ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43814456 |
ctgggaaatcggaaatcgtcctagagacgaaa---atgatgatcatccaaaaggcctctttcacatggatgaagatagcaaatttctagagtacaagtcg |
43814360 |
T |
|
| Q |
321 |
ctaagtgaagcagcacttgatctcagatcaattgaagttcaaaacaattgggatgaaataactagagataataatagtaataaccatgatgtgcctcctt |
420 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
43814359 |
ctaagtgaagctgtacttgatctcagatcaattgaagttcaaaacaattgggatgaaaaaactacagataataatggtaataaccatgatgtgcctcctt |
43814260 |
T |
|
| Q |
421 |
ctatcgccaatgaaaacatgttcgtgaaacaaacatcttggcctgctcatgtttactacaaaccagaagtcaaagcaaaagaggaagtatcaaaaactta |
520 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
43814259 |
ctatcgccaatgaaaacatgtctgtgaaacaaatgtcttggccagctcatgtttacta------------caaagcaaaagaggaagaatcgaaaactta |
43814172 |
T |
|
| Q |
521 |
tgaaagtgcaagttcgttgtctctaacgacatttacatcactattgattgaatttgtagcaaggcttcaaaatttagtggattcatttgaagaattgggt |
620 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
43814171 |
tgaaagtgctagttcattgtctctaactacatttacatcacttttgattgaatttgtagcaaggcttcaaaatttggtggatgcatttgaagaattgggt |
43814072 |
T |
|
| Q |
621 |
gagaaagctaactttaaggacccccttgaacaacaaggtgccatagcatctggctggtttaggaggagattgtttaactgctttatatcccaggattgac |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| || | || || ||||| ||| ||||| ||||||||||| | |||| |||||||| |
|
|
| T |
43814071 |
gagaaagctaactttaaggacccccttgaacaacaaagtgtggtaacctcgggtgggttttggaccagattatttaactgcttcaaatcctaggattgaa |
43813972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 496 - 657
Target Start/End: Original strand, 31809818 - 31809979
Alignment:
| Q |
496 |
caaaagaggaagtatcaaaaacttatgaaagtgcaagttcgttgtctctaacgacatttacatcactattgattgaatttgtagcaaggcttcaaaattt |
595 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||| |||||||| || | | ||||| ||||||| ||||||||||||| || ||||| ||||| | |
|
|
| T |
31809818 |
caaaagtggaagaatcaaaaacctatgaaagtgctagttcgttaactttggcaacattctcatcacttctgattgaatttgtggctaggctacaaaacct |
31809917 |
T |
|
| Q |
596 |
agtggattcatttgaagaattgggtgagaaagctaactttaaggacccccttgaacaacaag |
657 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
31809918 |
tgttgattcttttgaagaattaggtgagaaagcgaagtttaaggaccctcttgaacaacaag |
31809979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 31809499 - 31809566
Alignment:
| Q |
165 |
gaagaattgcaactaaagatcgataaaaaatcttaccttcttgtcaattcagagctctgggaaatcgg |
232 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||| | ||||||| ||| | ||||| ||||||||||| |
|
|
| T |
31809499 |
gaagaattacaacaaaagatcgacaaaaaatctttcattcttgtaaatgccgagctgtgggaaatcgg |
31809566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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