View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7136_low_11 (Length: 356)
Name: NF7136_low_11
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7136_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 29104697 - 29105049
Alignment:
| Q |
1 |
ttaccatgcactcagcaataattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttc |
100 |
Q |
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| T |
29104697 |
ttaccatgcactcagcaataattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttc |
29104796 |
T |
|
| Q |
101 |
ttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaatatctgg |
200 |
Q |
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| T |
29104797 |
ttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaggcctggttcatggttaatatctgg |
29104896 |
T |
|
| Q |
201 |
taaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatgg |
300 |
Q |
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| T |
29104897 |
taaaactctttttggagcctcttcatagcgatttgcattaggttttgagcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatgg |
29104996 |
T |
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| Q |
301 |
ctctttgaagttggtgaacgtggtgaatatactgaatggcttcatttcagtcg |
353 |
Q |
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| T |
29104997 |
ctctttgaagttggttaacgtggtgaatatactgaatggcttcgtttctgtcg |
29105049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 3 - 344
Target Start/End: Original strand, 29090438 - 29090779
Alignment:
| Q |
3 |
accatgcactcagcaataattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttctt |
102 |
Q |
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||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |||| || || ||| || |||| |
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| T |
29090438 |
accatgcactcggcaataattttcaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtctt |
29090537 |
T |
|
| Q |
103 |
ccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaatatctggta |
202 |
Q |
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|| ||||||| ||||||||||||| ||||||||| || |||||| || ||||||||||||| ||||||| | ||||||||||||||||| |||||||| |
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| T |
29090538 |
ccagtgttccaccatcaaaagaaccgaaagaagtgctaaaggatctgatggagaaggattcagagtctaagtatgcctggttcatggttaagatctggta |
29090637 |
T |
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| Q |
203 |
aaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggct |
302 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29090638 |
gaattctttttggagcctcttcatagcaatttgcattaggttttgtgcgtggatgagttctggagacgatggttcgagctcgagtaacgagtgcatggct |
29090737 |
T |
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| Q |
303 |
ctttgaagttggtgaacgtggtgaatatactgaatggcttca |
344 |
Q |
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| T |
29090738 |
ctttgaagttggttaacgtggtgaatgtactgaatggcttca |
29090779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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