View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7136_low_12 (Length: 295)
Name: NF7136_low_12
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7136_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 1846531 - 1846767
Alignment:
| Q |
44 |
gctgtcacggaaaaatggttttctaaactcaagactggtgttttgaatgctcagcagagcttggaagcttgcaaatatgtcaggggattggtgagttact |
143 |
Q |
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| T |
1846531 |
gctgtcacggaaaaatggttgcctgaactcaagactggtgttttgaatactcagcagagcttggaagcttgcaaatatgtcaggggattggtgagttact |
1846630 |
T |
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| Q |
144 |
actgttattgttataagattgatataccttaaaacagtgctgaaaattcaggaacgagttgatgcaacttctgctaagcatgttttatttacatatattg |
243 |
Q |
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| T |
1846631 |
gttgttattgttataagattgatataccttaaaacagtgctgaaaattcaggaacgagttgatgcaacttctgctaagcatgttttatttacatatattg |
1846730 |
T |
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| Q |
244 |
ctatataaaaaacttcatcacaattgttcaatttgat |
280 |
Q |
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| T |
1846731 |
ctatataaaaaacttcatcacaattgttcaatttgat |
1846767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 18200439 - 18200167
Alignment:
| Q |
9 |
atttttctttaaatttgacagcagaacaagaaagagctgtcacggaaaaatggttttctaaactcaagactggtgttttgaatgctcagcagagcttgga |
108 |
Q |
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| T |
18200439 |
atttttctttaaatttggcagcagaacaagaaagagctatcacagaaaaatggttgcctgaacttaagattggtgttttgaatgcttggcagagcttgaa |
18200340 |
T |
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| Q |
109 |
agcttgcaaatatgtcaggggattggtgagttactactgttattgttataagattgatataccttaaaacagtgctgaaaa-ttcaggaacgagttgatg |
207 |
Q |
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| T |
18200339 |
agcttgcaaatatgtttggggattggtgagttattgccgttattattataagattgatatctcttaaaacagtgctgaaaatttcaggaaccagttgatg |
18200240 |
T |
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| Q |
208 |
caacttctgctaagcatgttttatttacatatattgctatataaaaaacttcatcacaattgttcaatttgat |
280 |
Q |
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| T |
18200239 |
caacttctgataagcatgttttatttacatatattgctatataaaaaacttcatcacaattgttcaatttgat |
18200167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 5342314 - 5342583
Alignment:
| Q |
9 |
atttttctttaaatttgacagcagaacaagaaagagctgtcacggaaaaatggttttctaaactcaagactggtgttttgaatgctcagcagagcttgga |
108 |
Q |
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| T |
5342314 |
atttttctttaaatttggcagcagaacaagaaagagctgtcatggaaaaatggttgcctgaactcaagactggtgttttgaatgctcagcagagtttgga |
5342413 |
T |
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| Q |
109 |
agcttgcaaatatgtcaggggattggtgagttactactgttattgttataagattgatataccttaaaacagtgctgaaaa-ttcaggaacgagttgatg |
207 |
Q |
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| T |
5342414 |
agcttgcaaatatgtttggggattggtgagttactgctcttatggttataagattgatatcccttaaagcagtgctgaaaatttcagaaatgacttgatg |
5342513 |
T |
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| Q |
208 |
caacttctgctaagcatgttttatttacatatattgctatataaaaaacttcatcacaattgttcaattt |
277 |
Q |
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|||||||||||||||| |||||||||||||||||||||| || | ||||||||||||||||||| ||||| |
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| T |
5342514 |
caacttctgctaagcacgttttatttacatatattgctacattataaacttcatcacaattgttaaattt |
5342583 |
T |
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