View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7136_low_14 (Length: 283)
Name: NF7136_low_14
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7136_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 8175691 - 8175958
Alignment:
| Q |
20 |
aatagtttatgtttttatgactttatgttattgacttcacaaccaaccatgtgaagatagannnnnnnnnccttttatgtttcctgtaaacccaagaaaa |
119 |
Q |
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| T |
8175691 |
aatagtttatgtttttatgactttatgttattgacttcacaaccaaccctgtgaagatagattttttttttcttttatgtttcatgtaaacccaagaaaa |
8175790 |
T |
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| Q |
120 |
ttgttaaccgtggtagtcaaaatttattgctatca----acatcact-----taatgatgttgatccctatcactgcgtttcgtgcttattggaatccta |
210 |
Q |
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| T |
8175791 |
ttgttaaccgtggtagtcaaaatttattgccatcacttaaaatcatacgatataatgatgttgatccctatcactgcgttccgtgtttattggaatccta |
8175890 |
T |
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| Q |
211 |
aattgctcggagacgatggaatctccatgctaagtggtggattctgctactattccacaggttctgct |
278 |
Q |
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| T |
8175891 |
aattgctaggagacggtggaatctccatgctaggtggtggattccgctactattctacgtgttctgct |
8175958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 8149305 - 8149420
Alignment:
| Q |
163 |
taatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctacta |
262 |
Q |
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| T |
8149305 |
taatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctacta |
8149404 |
T |
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| Q |
263 |
ttccacaggttctgct |
278 |
Q |
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| T |
8149405 |
ttctacatgttctgct |
8149420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 8153929 - 8154044
Alignment:
| Q |
163 |
taatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctacta |
262 |
Q |
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| T |
8153929 |
taatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctacta |
8154028 |
T |
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| Q |
263 |
ttccacaggttctgct |
278 |
Q |
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| T |
8154029 |
ttctacatgttctgct |
8154044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 8148652 - 8148764
Alignment:
| Q |
20 |
aatagtttatgtttttatgactttatgttattgacttcacaaccaaccatgtgaagataga-nnnnnnnnnccttttatgtttcctgtaaacccaagaaa |
118 |
Q |
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| T |
8148652 |
aatagtttatgtttttatgactttatgttattgacttcacaaccaaccctgtgaagatagattttttcttttcttttttgtttcatgtaaacccaagaaa |
8148751 |
T |
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| Q |
119 |
attgttaaccgtg |
131 |
Q |
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| T |
8148752 |
attgttaaccgtg |
8148764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 8153276 - 8153388
Alignment:
| Q |
20 |
aatagtttatgtttttatgactttatgttattgacttcacaaccaaccatgtgaagataga-nnnnnnnnnccttttatgtttcctgtaaacccaagaaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
8153276 |
aatagtttatgtttttatgactttatgttattgacttcacaaccaaccctgtgaagatagattttttcttttcttttttgtttcatgtaaacccaagaaa |
8153375 |
T |
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| Q |
119 |
attgttaaccgtg |
131 |
Q |
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| T |
8153376 |
attgttaaccgtg |
8153388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 28662122 - 28662205
Alignment:
| Q |
167 |
gatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtgg |
250 |
Q |
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||||||| ||||||| |||| ||| |||| ||||||||||||||||||| | ||||| ||||||| || ||||| ||||||| |
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| T |
28662122 |
gatgttgctccctataactgtgttctgtgccgattggaatcctaaattgctagcagacggtggaatccccgtgctaggtggtgg |
28662205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 7320406 - 7320463
Alignment:
| Q |
208 |
ctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctactattc |
265 |
Q |
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| T |
7320406 |
ctaaattgctagcagacggtggaatctccatgctaggtggtggaatctgttacgattc |
7320463 |
T |
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