View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7136_low_18 (Length: 255)

Name: NF7136_low_18
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7136_low_18
NF7136_low_18
[»] chr5 (17 HSPs)
chr5 (1-240)||(8529433-8529672)
chr5 (5-239)||(8536001-8536235)
chr5 (5-231)||(9074118-9074344)
chr5 (29-232)||(1599679-1599882)
chr5 (106-224)||(8547470-8547588)
chr5 (114-227)||(2844435-2844548)
chr5 (114-227)||(2873878-2873991)
chr5 (34-227)||(2856268-2856464)
chr5 (108-231)||(8644833-8644956)
chr5 (29-227)||(2904384-2904585)
chr5 (28-86)||(8637396-8637454)
chr5 (34-77)||(2844594-2844637)
chr5 (34-74)||(8644747-8644787)
chr5 (34-77)||(2874031-2874074)
chr5 (28-67)||(11354043-11354082)
chr5 (28-67)||(11373311-11373350)
chr5 (117-161)||(9004088-9004132)
[»] chr4 (1 HSPs)
chr4 (4-240)||(9443597-9443833)
[»] chr7 (2 HSPs)
chr7 (5-240)||(48361223-48361458)
chr7 (9-220)||(35780317-35780544)
[»] chr6 (1 HSPs)
chr6 (105-231)||(16716982-16717108)
[»] scaffold0627 (1 HSPs)
scaffold0627 (114-219)||(5293-5398)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8529433 - 8529672
Alignment:
Q  1 gcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529433 gcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttc 8529532  T
Q  101 gatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8529533 gatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaacc 8529632  T
Q  201 attgcaagaattcacaatatcaaacttatcaatatctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8529633 attgcaagaattcacaatatcaaacttatcaatatctctg 8529672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 8536001 - 8536235
Alignment:
Q  5 gtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatt 104  Q
    ||||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||| ||| || |||     
T  8536001 gtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtcctagccttcttacccgattttgatc 8536100  T
Q  105 tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg 204  Q
     | | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8536101 cgcaatagattcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg 8536200  T
Q  205 caagaattcacaatatcaaacttatcaatatctct 239  Q
    |||||||||||||||||||||||||||| ||||||    
T  8536201 caagaattcacaatatcaaacttatcaaaatctct 8536235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 9074344 - 9074118
Alignment:
Q  5 gtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatt 104  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||  ||||||||| |||||||||||    
T  9074344 gtttaccatgtcttatccacattcttattaccttatattcattagtattaggttggaatccaaaaccaacttgtcctaccattcttacccgagttcgatt 9074245  T
Q  105 tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg 204  Q
     || |||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||   || ||| ||||||||||||||||||||||||    
T  9074244 cgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccattg 9074145  T
Q  205 caagaattcacaatatcaaacttatca 231  Q
    |||||||||||||||||||||||||||    
T  9074144 caagaattcacaatatcaaacttatca 9074118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 1599882 - 1599679
Alignment:
Q  29 ttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttat 128  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||| |||||| |||| |  ||||||||||||||||||||    
T  1599882 ttatcaccttatattcattagttttaggttggaaaccaaaagcagctcgtccttgccttcctacccgagtttgattcgcggtagattcaggaagtcttat 1599783  T
Q  129 gaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaactta 228  Q
    ||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1599782 gaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaagaattcacaatattaaactta 1599683  T
Q  229 tcaa 232  Q
    ||||    
T  1599682 tcaa 1599679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 8547588 - 8547470
Alignment:
Q  106 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 205  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||    
T  8547588 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 8547489  T
Q  206 aagaattcacaatatcaaa 224  Q
    |||||||||||||||||||    
T  8547488 aagaattcacaatatcaaa 8547470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 2844548 - 2844435
Alignment:
Q  114 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 213  Q
    |||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | |||||  ||||| |||||||| || |||||||||||||||    
T  2844548 ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc 2844449  T
Q  214 acaatatcaaactt 227  Q
    |||||  |||||||    
T  2844448 acaatgccaaactt 2844435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 2873991 - 2873878
Alignment:
Q  114 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 213  Q
    |||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | |||||  ||||| |||||||| || |||||||||||||||    
T  2873991 ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc 2873892  T
Q  214 acaatatcaaactt 227  Q
    |||||  |||||||    
T  2873891 acaatgccaaactt 2873878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 2856464 - 2856268
Alignment:
Q  34 accttatattcattagttttaggttggaatccaaaaccagcttg--accttgcattcttactcgagttcg-atttgtagtagattcaggaagtcttatga 130  Q
    |||||||||||||||||||| |||||||| ||||||||||||||   ||  ||| | |||  | |||  | | | ||||||  |||||||||| || | |    
T  2856464 accttatattcattagttttgggttggaaaccaaaaccagcttgtacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaagtattgtaa 2856365  T
Q  131 actcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaactt 227  Q
    | |||| ||| ||||||||||| |||||||| ||| |||| | |||||  ||||| |||||||| || ||||||||||||||||||||  |||||||    
T  2856364 attccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaatgccaaactt 2856268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 8644833 - 8644956
Alignment:
Q  108 agtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaa 207  Q
    ||||| || |||||||||||| |||||||| |||||||| ||||| || ||||||||  ||||   | |||| | |  ||||||||| || |||||||||    
T  8644833 agtagctttaggaagtcttataaactccccagtgactggattgcaaattactaatggtcttccttcaaatggatgacgcaaacaaagcaagccattgcaa 8644932  T
Q  208 gaattcacaatatcaaacttatca 231  Q
    |||||||||| | |||||||||||    
T  8644933 gaattcacaacaccaaacttatca 8644956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 2904585 - 2904384
Alignment:
Q  29 ttattaccttatattcattagttttaggttggaatccaaaaccagcttga--ccttgcattcttactcgagttcgattt-gtagtagattcaggaagtct 125  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||||||   ||  ||| | |||  | |||  ||  | ||||||  |||||||||| |    
T  2904585 ttatcaccttatattcattagttttgggttggaaaccaaaaccagcttgcacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaagtat 2904486  T
Q  126 tatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaac 225  Q
    | |||| |||| ||| ||||||||||| ||| |||| ||| ||||   |||||  ||||| |||||||| || ||||||||||||||||||||  |||||    
T  2904485 tgtgaattccctcgttactgggttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaatgccaaac 2904386  T
Q  226 tt 227  Q
    ||    
T  2904385 tt 2904384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 8637396 - 8637454
Alignment:
Q  28 cttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcat 86  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||    
T  8637396 cttatcaccttatattcattagttttaggttggaaaccaaaaccaacttgtcctcgcat 8637454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 2844637 - 2844594
Alignment:
Q  34 accttatattcattagttttaggttggaatccaaaaccagcttg 77  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  2844637 accttatattcattagttttgggttggaaaccaaaaccagcttg 2844594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 8644747 - 8644787
Alignment:
Q  34 accttatattcattagttttaggttggaatccaaaaccagc 74  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  8644747 accttatattcattagttttaggttggaagccaaaagcagc 8644787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 2874074 - 2874031
Alignment:
Q  34 accttatattcattagttttaggttggaatccaaaaccagcttg 77  Q
    |||||||||||||||||||| |||||||| | ||||||||||||    
T  2874074 accttatattcattagttttgggttggaaactaaaaccagcttg 2874031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 11354082 - 11354043
Alignment:
Q  28 cttattaccttatattcattagttttaggttggaatccaa 67  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  11354082 cttatcaccttatattcattagttttaggttggaagccaa 11354043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 11373311 - 11373350
Alignment:
Q  28 cttattaccttatattcattagttttaggttggaatccaa 67  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  11373311 cttatcaccttatattcattagttttaggttggaagccaa 11373350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 9004088 - 9004132
Alignment:
Q  117 aggaagtcttatgaactcccccgtgactgggttgcagatcactaa 161  Q
    ||||||||||||||| ||||| |||||||||||||| | ||||||    
T  9004088 aggaagtcttatgaattccccagtgactgggttgcataccactaa 9004132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 9443597 - 9443833
Alignment:
Q  4 tgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443597 tgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgat 9443696  T
Q  104 ttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9443697 ttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccatt 9443796  T
Q  204 gcaagaattcacaatatcaaacttatcaatatctctg 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  9443797 gcaagaattcacaatatcaaacttatcaatatctctg 9443833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 48361458 - 48361223
Alignment:
Q  5 gtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatt 104  Q
    ||||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||     
T  48361458 gtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttacccgagttcgata 48361359  T
Q  105 tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg 204  Q
     | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  48361358 cgcagtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattg 48361259  T
Q  205 caagaattcacaatatcaaacttatcaatatctctg 240  Q
    |||||||||||||||||||||||||||| |||||||    
T  48361258 caagaattcacaatatcaaacttatcaaaatctctg 48361223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 35780317 - 35780544
Alignment:
Q  9 aacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcga---gt------t 99  Q
    ||||||||||||||| |   |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||   ||      |    
T  35780317 aacatgtcttatccatatttttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttactcgatccgtatttaat 35780416  T
Q  100 c------gatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatggg-tttccaaaagatgggtcagacaaacaa 192  Q
    |      || | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |   | |||| | ||||||||||    
T  35780417 cttaaaggagtcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaa 35780516  T
Q  193 agtaaaccattgcaagaattcacaatat 220  Q
    || ||||||||||||||||| |||||||    
T  35780517 agcaaaccattgcaagaattgacaatat 35780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 16716982 - 16717108
Alignment:
Q  105 tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg 204  Q
    |||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||  |||||||||  || ||| ||||||||||| || || |||||     
T  16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta 16717081  T
Q  205 caagaattcacaatatcaaacttatca 231  Q
    || ||||||||||||| ||||||||||    
T  16717082 catgaattcacaatattaaacttatca 16717108  T

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Target: scaffold0627 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 5293 - 5398
Alignment:
Q  114 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 213  Q
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T  5293 ttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccattacaggaattc 5392  T
Q  214 acaata 219  Q
    ||||||    
T  5393 acaata 5398  T

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