View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7136_low_19 (Length: 246)
Name: NF7136_low_19
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7136_low_19 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 53434878 - 53434651
Alignment:
| Q |
18 |
ataactttctgaaaatactatgttaccataaatcatataaaccaatgctgacacaataaagcactgattaaacttatttactttaactagtccgtggctt |
117 |
Q |
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| T |
53434878 |
ataactttctgaaa-tactatgttaccataaatcatataaaccaatgctgacacaataaagcactgattaaacttatttactttaactagtccgtggctt |
53434780 |
T |
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| Q |
118 |
cttatataaatgtgtgcgagggggagctaataagcatactcatcaactaattaaatcatactatcaaaactaactaagttcaattcaagagtacttaatt |
217 |
Q |
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| T |
53434779 |
cttatataaatgtgtgcgagggggagctaataagcatactcatcaactaattaaatcatactatcaaaactaactaagttcaattcaagagtacttaatt |
53434680 |
T |
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| Q |
218 |
ataaacatgaaaggaaatccaattttatt |
246 |
Q |
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| T |
53434679 |
ataaacatgaaaggaaatccaattttatt |
53434651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 48370508 - 48370576
Alignment:
| Q |
90 |
cttatttactttaactagtccg-tggcttcttatataaatgtgtgcgagggggagctaataagcatact |
157 |
Q |
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| T |
48370508 |
cttatttactttaactagtccaatggctttttatataaatgtgtgagggcgggagctaacaagcatact |
48370576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 26099686 - 26099615
Alignment:
| Q |
91 |
ttatttactttaactagtccg-tggcttcttatataaatgtgtgcgagggggagctaataagcatactcatc |
161 |
Q |
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| T |
26099686 |
ttatttactttaattcgtccaatggcttcttatataaatttgtgagcgtgggagctaacaagcatactcatc |
26099615 |
T |
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