View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7136_low_3 (Length: 616)
Name: NF7136_low_3
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7136_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 24 - 605
Target Start/End: Complemental strand, 42126251 - 42125670
Alignment:
| Q |
24 |
aaaacatcattccatatgatagcagttgtgttatttgaacatgaagttacaaacatcgcatgtgacactgtgtttatctatatctctcttttactttata |
123 |
Q |
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| T |
42126251 |
aaaacatcattccatatgatagcagttgtgttatttgaacatgaaattacaaacatcgcatgtgacactgtgtttatctatatctctcttttactttata |
42126152 |
T |
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| Q |
124 |
tcctctacaacttacagacatttcaaaaatacacaaaaaccaaagtcgacatcaaaattttgagtcaaaaatcatgtctataattaataattctccacga |
223 |
Q |
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| T |
42126151 |
tcctctacaacttacagacatttcaaaaatacacaaaaaccaaagtcgacatcaaaattttgagtcaaaaatcatgtctataattaataattgtccacga |
42126052 |
T |
|
| Q |
224 |
gtcacgatatattaaatttataacagaaattgatatttatttattttttctttggtttcagaatgcagtgttgcttgttaccatgaccaaaaccgagtct |
323 |
Q |
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| T |
42126051 |
gtcacgatctattaaatttataacagaaattgatatttatttattttttctttggtttcagaatgcagtgttgcttgttactatgaccaaaaccgagtct |
42125952 |
T |
|
| Q |
324 |
gatgctatataccattttcttgggatttatcttgttgcctttgttagttcccttgctgcagctattacttacttcatgtatacatggttcttccaaaaac |
423 |
Q |
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| T |
42125951 |
gatgctatataccattttcttgggatttatcttgttgcctttgttagttcccttgctgcagctattacttacttcatgtatacatggttcttccaaaaac |
42125852 |
T |
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| Q |
424 |
ctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttca |
523 |
Q |
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| T |
42125851 |
ctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttca |
42125752 |
T |
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| Q |
524 |
atcaaatcccattgcctttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcacaggttct |
605 |
Q |
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| T |
42125751 |
atcaaatcccattgcctttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcacatgttct |
42125670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 440 - 598
Target Start/End: Complemental strand, 24929134 - 24928976
Alignment:
| Q |
440 |
cttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcc |
539 |
Q |
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| T |
24929134 |
cttttcatttgtttgcatatgtggtgcttttcactggatcccatttaccgtcattgcatatgctaccatgttttctgaagtcccatcaaaccccatcacc |
24929035 |
T |
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| Q |
540 |
tttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcac |
598 |
Q |
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| T |
24929034 |
tttgccattacatttaccatcgcctacttgcttcacggtctaatactcatcgctctcac |
24928976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 33844149 - 33844221
Alignment:
| Q |
95 |
gtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaa |
167 |
Q |
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| T |
33844149 |
gtttatctctatctctctcttactatttatctcctacaacttaaatgcatttcaaaaatacacaaaaaccaaa |
33844221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 36646827 - 36646749
Alignment:
| Q |
92 |
tgtgtttatctatatctctcttttactttatatcctctacaacttac--agacatttcaaaaatacacaaaaaccaaag |
168 |
Q |
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| T |
36646827 |
tgtgtttatctctatctctcttttactttttaccttatacaacttacttagatttttaaaaaatacacaaaaatcaaag |
36646749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 12119911 - 12119845
Alignment:
| Q |
96 |
tttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaa |
162 |
Q |
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| T |
12119911 |
tttatctatatctctctcttactttttatcttctattggttacacatatttcaaaaatacacaaaaa |
12119845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 20809151 - 20809087
Alignment:
| Q |
94 |
tgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacaca |
158 |
Q |
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| T |
20809151 |
tgttcatctctatctctctcttactttttatcttttacaacatacacacatttaaaaaatacaca |
20809087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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