View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7136_low_4 (Length: 612)

Name: NF7136_low_4
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7136_low_4
NF7136_low_4
[»] chr4 (6 HSPs)
chr4 (204-470)||(45545522-45545788)
chr4 (7-116)||(33748232-33748341)
chr4 (7-117)||(54453861-54453971)
chr4 (7-116)||(42057894-42058003)
chr4 (62-107)||(29820293-29820338)
chr4 (62-110)||(42478263-42478311)
[»] chr1 (10 HSPs)
chr1 (7-116)||(38863428-38863537)
chr1 (7-116)||(37285456-37285564)
chr1 (11-116)||(26733426-26733530)
chr1 (37-108)||(47215499-47215570)
chr1 (27-110)||(50150066-50150149)
chr1 (45-109)||(14998509-14998573)
chr1 (33-110)||(43011612-43011689)
chr1 (11-110)||(46879059-46879157)
chr1 (63-109)||(5056041-5056087)
chr1 (62-110)||(29922495-29922543)
[»] chr3 (5 HSPs)
chr3 (7-116)||(7944219-7944328)
chr3 (7-118)||(19647619-19647730)
chr3 (7-116)||(40916567-40916675)
chr3 (27-110)||(34020547-34020630)
chr3 (546-593)||(41423142-41423189)
[»] chr5 (6 HSPs)
chr5 (7-115)||(14136398-14136506)
chr5 (7-117)||(11782160-11782270)
chr5 (7-117)||(27514203-27514312)
chr5 (7-117)||(38695021-38695132)
chr5 (10-107)||(1463734-1463831)
chr5 (7-92)||(40323389-40323474)
[»] chr6 (3 HSPs)
chr6 (7-108)||(18058399-18058500)
chr6 (7-117)||(30452797-30452907)
chr6 (32-110)||(25049495-25049573)
[»] scaffold0060 (1 HSPs)
scaffold0060 (7-116)||(60557-60666)
[»] chr8 (5 HSPs)
chr8 (7-115)||(31664815-31664923)
chr8 (7-114)||(35176339-35176446)
chr8 (14-110)||(42146062-42146158)
chr8 (7-113)||(27562591-27562698)
chr8 (62-109)||(32039080-32039127)
[»] chr7 (2 HSPs)
chr7 (7-116)||(42062089-42062198)
chr7 (7-112)||(27923264-27923368)
[»] chr2 (4 HSPs)
chr2 (7-116)||(7000443-7000551)
chr2 (14-100)||(42481211-42481296)
chr2 (532-593)||(30602575-30602636)
chr2 (62-110)||(11761899-11761947)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 204 - 470
Target Start/End: Complemental strand, 45545788 - 45545522
Alignment:
Q  204 aggacacaactgatcaagtgggacaaaattatatttaatctttggaacaaaagcagcttcattggcaatctcttccacctcagaattcgcatacaatctc 303  Q
    ||||| ||||||||||| ||||||||||||  ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||    
T  45545788 aggacccaactgatcaattgggacaaaattgaatttagtctctggaacaaaagcagcttcattggcaacctcttccacctcagaattctcattcaatgtc 45545689  T
Q  304 attttataaccatttggctcagtattgcgatattcgtaatcaaatgccaaagttgcttttgaaatataataaacctctcccataacaaatttgtcataaa 403  Q
    |||| |||| | |||  | |||| |||  || || || | ||| |  ||||| | | |||||||| ||||| |||| ||||||| |||||||||||||||    
T  45545688 atttcataatcgtttaccacagttttgaaatttttgttagcaactttcaaagatccctttgaaatgtaatacacctttcccatagcaaatttgtcataaa 45545589  T
Q  404 atttccttgcaacatcattaagcaaagttgcttgaatctgagtaccctgaaaatattccaaaacaaa 470  Q
    | ||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  45545588 acttccttgcagcatcattaaacatagttgcttgaatctgagtaccctgaaaatatttcaaaacaaa 45545522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 33748232 - 33748341
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||| ||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  33748232 tttgatgtttatagaccatgataaaatttgatggattcatatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcatttt 33748331  T
Q  107 atacttcacc 116  Q
    ||||||||||    
T  33748332 atacttcacc 33748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 54453971 - 54453861
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||| ||||||||| | ||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  54453971 tttggtatttatagaccatgataaaatttgatgggttcatatgatctaatggtacaaaaaattgatccatcataaaccaatatttttataggttcatttt 54453872  T
Q  107 atacttcaccc 117  Q
    |||||||||||    
T  54453871 atacttcaccc 54453861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 42057894 - 42058003
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    ||||||||||||| || | ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  42057894 tttggtgtttataaaccatgataaaatttggtgggttcttatgatctaatggtacaaaaaattggtccatcataaaccaatatttttataggttcatttt 42057993  T
Q  107 atacttcacc 116  Q
     |||||||||    
T  42057994 gtacttcacc 42058003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 29820293 - 29820338
Alignment:
Q  62 aaaaaattggtccatcataaaccaatattttcataggttgatttta 107  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||    
T  29820293 aaaaaattggtccatcataaaccaatattctcatgggttcatttta 29820338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 42478263 - 42478311
Alignment:
Q  62 aaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    ||||||||| |||||||| || |||||||||||| |||| |||||||||    
T  42478263 aaaaaattgatccatcatgaatcaatattttcatgggttcattttatac 42478311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 38863537 - 38863428
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  38863537 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 38863438  T
Q  107 atacttcacc 116  Q
    ||||||||||    
T  38863437 atacttcacc 38863428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 37285564 - 37285456
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||  ||||||||||| ||| ||| |||||    
T  37285564 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatgataccaaaaattggtccatcatggaccaatatttttata-gttcatttt 37285466  T
Q  107 atacttcacc 116  Q
    ||||||||||    
T  37285465 atacttcacc 37285456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 26733426 - 26733530
Alignment:
Q  11 gtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    |||||||||||| | ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||| ||||||||||| ||| ||| ||||||||     
T  26733426 gtgtttatagaccatgataaaatttggtgggttcatataatctaatggtac-aaaaattggtccatcatagaccaatatttttataagttcattttatag 26733524  T
Q  111 ttcacc 116  Q
    ||||||    
T  26733525 ttcacc 26733530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 47215570 - 47215499
Alignment:
Q  37 gtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttat 108  Q
    |||| ||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||    
T  47215570 gtgggttcatattatttaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 47215499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 50150149 - 50150066
Alignment:
Q  27 ataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    |||| ||||||||| |||||||||| ||| ||||||||||| ||||||||| || ||||||||||||| ||||| |||||||||    
T  50150149 ataagatttggtgggttcatatgatctaacggtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 50150066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 14998573 - 14998509
Alignment:
Q  45 atatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttata 109  Q
    ||||||| ||| |||||||||||||||||||||||  ||||||||||| ||||||| ||||||||    
T  14998573 atatgatctaacggtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 14998509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 43011689 - 43011612
Alignment:
Q  33 tttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    |||||||| ||||||||||  || ||||||||||| ||||||||| || |||||||||||   ||||| |||||||||    
T  43011689 tttggtgggttcatatgatccaacggtacaaaaaactggtccatcttagaccaatatttttccaggttcattttatac 43011612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 46879157 - 46879059
Alignment:
Q  11 gtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    |||||||||||| | |||||||||| | |||||||||| || |||   |  |||||||| |||||||||  |||||||||||||| |||| |||||||||    
T  46879157 gtgtttatagaccatgataaaatttag-ggattcatataatctaaccattgaaaaaattagtccatcatggaccaatattttcatgggttcattttatac 46879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 5056041 - 5056087
Alignment:
Q  63 aaaaattggtccatcataaaccaatattttcataggttgattttata 109  Q
    |||||||||||||||||  |||||||||||||| |||| ||||||||    
T  5056041 aaaaattggtccatcatggaccaatattttcatgggttcattttata 5056087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 29922495 - 29922543
Alignment:
Q  62 aaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    |||||||||||||||||| ||||||||||| ||| | || |||||||||    
T  29922495 aaaaaattggtccatcatgaaccaatatttccatggattcattttatac 29922543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 7944328 - 7944219
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  7944328 tttgatgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcatttt 7944229  T
Q  107 atacttcacc 116  Q
    ||||||||||    
T  7944228 atacttcacc 7944219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 19647730 - 19647619
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||  ||||||||||| ||||||| |||||    
T  19647730 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaatttggtccatcatggaccaatatttttataggttcatttt 19647631  T
Q  107 atacttcaccca 118  Q
    ||||||||||||    
T  19647630 atacttcaccca 19647619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 40916675 - 40916567
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||| ||||||||||| |  |||||||||| ||| ||| |||||| |||||||||||||||||| ||||  ||||| ||||||||| ||||||| |||||    
T  40916675 tttgatgtttatagaccataataaaatttgatgggttcttatgatctaatggtacaaaaaattgatccacaataaaacaatatttt-ataggtttatttt 40916577  T
Q  107 atacttcacc 116  Q
    ||||||||||    
T  40916576 atacttcacc 40916567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 34020630 - 34020547
Alignment:
Q  27 ataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    ||||| |||||||| ||||||||||| |||||||||||||| ||||||||  |||||||||||||||| | ||| |||||||||    
T  34020630 ataaagtttggtgggttcatatgattcaatggtacaaaaaactggtccattttaaaccaatattttcacatgttcattttatac 34020547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 593
Target Start/End: Complemental strand, 41423189 - 41423142
Alignment:
Q  546 atttaaagattctttgcttttagatcttcgtgaaatctgactgtacaa 593  Q
    ||||||||||| |||||||||||| |||| |||||| |||||||||||    
T  41423189 atttaaagattatttgcttttagaccttcatgaaatttgactgtacaa 41423142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 14136398 - 14136506
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  14136398 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 14136497  T
Q  107 atacttcac 115  Q
    |||||||||    
T  14136498 atacttcac 14136506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 11782160 - 11782270
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||| ||||||||||| | ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  11782160 tttgatgtttatagaccatgataaaatttggtgggttcatatgatctaacggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 11782259  T
Q  107 atacttcaccc 117  Q
    |||||||||||    
T  11782260 atacttcaccc 11782270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 27514203 - 27514312
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | ||||||||||||||| |||||||||| || ||||||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  27514203 tttggtgtttatagaccatgataaaatttggtgggttcatatgatcta-tggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 27514301  T
Q  107 atacttcaccc 117  Q
    |||||||||||    
T  27514302 atacttcaccc 27514312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 38695021 - 38695132
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcat-aaaccaatattttcataggttgattt 105  Q
    ||||||||||||| || | ||||||||||| | | |||||||||| ||||||||||||||||||||| ||||| ||| ||||||||| ||||||| ||||    
T  38695021 tttggtgtttataaaccatgataaaatttgataggttcatatgatctaatggtacaaaaaattggtctatcataaaaacaatatttttataggttcattt 38695120  T
Q  106 tatacttcaccc 117  Q
    ||||||||||||    
T  38695121 tatacttcaccc 38695132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 1463734 - 1463831
Alignment:
Q  10 ggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttta 107  Q
    ||||||||||||  | ||||||||||||||| |||||||||| ||||| ||  |||||||||||||||||  ||||||||||| ||||||| ||||||    
T  1463734 ggtgtttatagatcatgataaaatttggtgggttcatatgatctaatgatatcaaaaattggtccatcatggaccaatatttttataggttcatttta 1463831  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 40323389 - 40323474
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatatttt 92  Q
    |||| ||||||||||| | ||||| ||||||||  ||||||| || |||||||||||||||||||||||||||| |||||||||||    
T  40323389 tttgatgtttatagaccatgataagatttggtgagttcatataatctaatggtacaaaaaattggtccatcatagaccaatatttt 40323474  T

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Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 18058500 - 18058399
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  18058500 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 18058401  T
Q  107 at 108  Q
    ||    
T  18058400 at 18058399  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 30452797 - 30452907
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | ||||||||||  ||| |||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||||| |||||    
T  30452797 tttggtgtttatagaccatgataaaatttaatgggttcatatgatctaatggtacaaaaaattggtccatcatagaccaatattattataggtttatttt 30452896  T
Q  107 atacttcaccc 117  Q
    |||||||||||    
T  30452897 atacttcaccc 30452907  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 25049573 - 25049495
Alignment:
Q  32 atttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    ||||||||| ||||||||||  || |||| |||||||||||||||||||||||||||||||| |  ||| |||||||||    
T  25049573 atttggtgggttcatatgatccaacggtagaaaaaattggtccatcataaaccaatattttcgtgcgttcattttatac 25049495  T

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Target: scaffold0060 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 60666 - 60557
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | ||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |  |||||||| ||||||| |||||    
T  60666 tttggtgtttatagacaatgataaaatttggtgggttcatataatctaatggtacaaaaaattggtccatcatagattaatatttttataggttcatttt 60567  T
Q  107 atacttcacc 116  Q
    ||||||||||    
T  60566 atacttcacc 60557  T

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Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 31664815 - 31664923
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| | ||||||||||||||  |||||||||| |||||||||||||||||| ||||||||  ||||||||||| ||||||| |||||    
T  31664815 tttggtgtttatagaccatgataaaatttggtgagttcatatgatctaatggtacaaaaaattgttccatcatggaccaatatttttataggttcatttt 31664914  T
Q  107 atacttcac 115  Q
    |||||||||    
T  31664915 atacttcac 31664923  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 35176446 - 35176339
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||| ||| | ||||||||||||||||||||||| || |||||| | |||||||| |||||||||| ||||||||||| |||||||||||||    
T  35176446 tttggtgtttatggaccatgataaaatttggtggattcatataatctaatgggataaaaaattagtccatcatagaccaatatttttataggttgatttt 35176347  T
Q  107 atacttca 114  Q
    ||||||||    
T  35176346 atacttca 35176339  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 42146158 - 42146062
Alignment:
Q  14 tttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    |||||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  42146158 tttataaaccacgataaaatttggtgggttcatatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 42146062  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 27562591 - 27562698
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtac-aaaaaattggtccatcataaaccaatattttcataggttgattt 105  Q
    |||| ||||||||||| | ||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||| ||||||||||| ||||||| ||||    
T  27562591 tttgatgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaaaattagtccatcatagaccaatatttttataggttcattt 27562690  T
Q  106 tatacttc 113  Q
    ||||||||    
T  27562691 tatacttc 27562698  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 32039080 - 32039127
Alignment:
Q  62 aaaaaattggtccatcataaaccaatattttcataggttgattttata 109  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||    
T  32039080 aaaaaattgatccatcataaaccaatattttcatgggttcattttata 32039127  T

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Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 42062198 - 42062089
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||| ||||||||||| |  ||||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||| ||||||| |||||    
T  42062198 tttgatgtttatagaccataataaaatttggtggattcatatgatctaatggtacaaaaaattagttcatcatagaccaatatttttataggttcatttt 42062099  T
Q  107 atacttcacc 116  Q
     |||||||||    
T  42062098 gtacttcacc 42062089  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 27923264 - 27923368
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    ||||||||||||| || | ||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||     
T  27923264 tttggtgtttataaaccatgataaaatttggtgggttcttatgatctaatggtac-aaaaattggtccatcatgaaccaatatttttataggttcattta 27923362  T
Q  107 atactt 112  Q
    ||||||    
T  27923363 atactt 27923368  T

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Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 7000443 - 7000551
Alignment:
Q  7 tttggtgtttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggttgatttt 106  Q
    |||||||||||||||| |  |||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| ||| | |||    
T  7000443 tttggtgtttatagaccataataaaatttggtagattcatataatctaatggtacaaaaaattggtccatcatagaccaatattttcatatgttca-ttt 7000541  T
Q  107 atacttcacc 116  Q
    ||||||||||    
T  7000542 atacttcacc 7000551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 42481296 - 42481211
Alignment:
Q  14 tttatagactacgataaaatttggtggattcatatgatttaatggtacaaaaaattggtccatcataaaccaatattttcataggtt 100  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||||||||  ||||||||||| |||||||    
T  42481296 tttatagaccatgataaaatttggtggattcatatgatctaatggta-aaaaaattggtccatcatggaccaatatttttataggtt 42481211  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 532 - 593
Target Start/End: Complemental strand, 30602636 - 30602575
Alignment:
Q  532 attctaaccttatcatttaaagattctttgcttttagatcttcgtgaaatctgactgtacaa 593  Q
    |||| |||||| | |||||||||||||||||||||||| ||||||||||||  |||||||||    
T  30602636 attccaaccttgtaatttaaagattctttgcttttagaccttcgtgaaatcaaactgtacaa 30602575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 11761947 - 11761899
Alignment:
Q  62 aaaaaattggtccatcataaaccaatattttcataggttgattttatac 110  Q
    ||||||||||||||||||  |||| ||||||||||| |||||| |||||    
T  11761947 aaaaaattggtccatcatggaccattattttcatagcttgattctatac 11761899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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