View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7136_low_8 (Length: 393)
Name: NF7136_low_8
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7136_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 26599649 - 26599327
Alignment:
| Q |
18 |
atattcacgttaggttagcttaatgtatcagacaaatttggtttttcttatttactgaacacacaaattaaagnnnnnnn-tagggacacgttcttgcga |
116 |
Q |
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| T |
26599649 |
atattcacgttaggttagcttaatgtatcagacaaatttggtttttcttatttactgaacacacaaattaaagataaaaaatagggacacgttcttgcga |
26599550 |
T |
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| Q |
117 |
cttgtgattacactacacttatgatttcaattatatgtgaactctatgacctgtaggaggaccaagccaatatgggtctgacatttttggacccaaagaa |
216 |
Q |
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| T |
26599549 |
cttgtgattacactacacttatgatttcaattatatgtgaactctatgacctgtaggaggaccaagccaatatgggtctgacatttttggacccaaagaa |
26599450 |
T |
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| Q |
217 |
aatattggagggaccaatccaatattagagggaccaaaagaacacagtgaagattatttttctc----nnnnnnnnnnnctgctgattgagtagattatc |
312 |
Q |
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| T |
26599449 |
aatattggagggaccaatccaatattagagggaccaaaagaacacagtgaagattatttttctcaacaaaaaaaaaaaactactgattgagtagattatc |
26599350 |
T |
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| Q |
313 |
cttttttaaacgatacccatagt |
335 |
Q |
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| T |
26599349 |
cttttttaaacgatacacatagt |
26599327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 387
Target Start/End: Complemental strand, 26599310 - 26599272
Alignment:
| Q |
349 |
tatatatttaccttttggataacatattattcatctctc |
387 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
26599310 |
tatatatttaccttttggataacatattattcatgtctc |
26599272 |
T |
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