View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7136_low_9 (Length: 393)
Name: NF7136_low_9
Description: NF7136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7136_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 63 - 379
Target Start/End: Complemental strand, 48751289 - 48750967
Alignment:
| Q |
63 |
tcaaaaccaacaaaaactcatacatcactcgtttaggtaattgagatgtggtttagctgagacaaaagctgccttggtatgtgattgatgctatcctcgc |
162 |
Q |
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| T |
48751289 |
tcaaaaccaacaaaaa-tcatacatcactcgtttaggtaattgagatgtggtttagctgagaaaaaagctgccttggtatgtgattgatgctatcctcgc |
48751191 |
T |
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| Q |
163 |
cattccctctcatagaattgatcagcgagatttaattgcctggaaaggaaaaattatgggaatttctagcctacgcgtctctattacgagtgagcagttt |
262 |
Q |
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| T |
48751190 |
cattccctctcatagaattgatcaacgagatttaattgcctggaaaggaaaaattatgggaatttctagcctacgcgtctctattacgagtgagcagttt |
48751091 |
T |
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| Q |
263 |
gataaataattcagttactgcta-------taacgtggcgttggaagggacccaaaaagatcaagtttttgttgtggaagatttggcgaactctaacgac |
355 |
Q |
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| T |
48751090 |
gataaataattcagttactgctaaatgtattaacgtggtgttggaagggacctaaaaagatcaagtttttgttgtggaagatttggcgaactctaatgac |
48750991 |
T |
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| Q |
356 |
gataagaagaaacagtgtgccatg |
379 |
Q |
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| T |
48750990 |
gataagaagaaacagtgtaccatg |
48750967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 48751317 - 48751281
Alignment:
| Q |
26 |
ctgtatcacagaagccataacttaaaagtcaaaacca |
62 |
Q |
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| T |
48751317 |
ctgtgtcacataagccataacttaaaagtcaaaacca |
48751281 |
T |
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