View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7137_high_2 (Length: 304)
Name: NF7137_high_2
Description: NF7137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7137_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 42449471 - 42449756
Alignment:
| Q |
1 |
atatgggaagataaatcttacgaccccttgtgggaagtatatagtctcaaaaataactcttggaagaaacttgattttgatatgcgtaattgttatttct |
100 |
Q |
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| T |
42449471 |
atatgggaagataaatcctacgaccccttgtgggaagtatatagtctcaaaaataactcttggaagaaacttgattttgatatgcgtaattgttatttct |
42449570 |
T |
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| Q |
101 |
attcatcattgggaggtatgggagtgtacatggatggnnnnnnncattggtgggcaaaaagtgaatcaaaaaatattgaagaatgtttgctttcatttga |
200 |
Q |
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| T |
42449571 |
attcatcattgggaggtatgggagtgtacatggatggtttttttcattggtgggcaaaaagtgaatcaaaaaatattgaagaatgtttgctttcatttga |
42449670 |
T |
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| Q |
201 |
ctttagcaacgaggtgttgcttacaacacccaagccctcaaacatggatggtagttttgactctcgattcgtggtgaggcacctaa |
286 |
Q |
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| T |
42449671 |
ctttagcaacgaggtgttgcttacaacacccaagccctcaaacatggatggtagttttgactctcgattcgtggtgaggcacctaa |
42449756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 42262032 - 42262284
Alignment:
| Q |
1 |
atatgggaagataaatcttacgaccccttgtgggaagtatatagtctcaaaaataactcttggaagaaacttgattttgatatgcgtaattgttatttct |
100 |
Q |
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| T |
42262032 |
atatgggaagatagatcatacgatcccttgtgggagatatattctctcaaaagtaactcttggaagaaacttgaatttgatatgcgtaattgttattact |
42262131 |
T |
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| Q |
101 |
attcatcattgggaggtatgggagtgtacatggatggnnnnnnncattggtgggcaaaaagtgaatcaaaaaatattgaagaatgtttgctttcatttga |
200 |
Q |
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| T |
42262132 |
atacgccattgcgaggtatcggactctacacggatggaatgtttcattggtgggctaaaagtgaatccaaaaatattgaagagtgtttgttgtcatttga |
42262231 |
T |
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| Q |
201 |
ctttagcaacgaggtgttgcttacaacacccaagccctcaaacatggatggta |
253 |
Q |
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| T |
42262232 |
ctttagcaatgaggagttgtttaaaacccccataccctcaaacatggatggta |
42262284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 39721238 - 39721159
Alignment:
| Q |
176 |
ttgaagaatgtttgctttcatttgactttagcaacgaggtgttgcttacaacacccaagccctcaaacatggatggtagt |
255 |
Q |
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| T |
39721238 |
ttgaagaatgtttggtatcatttgactttagtaatgaggtgttgattacaacacccacaccctcatacttggatgttagt |
39721159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 19225791 - 19225732
Alignment:
| Q |
38 |
tatatagtctcaaaaataactcttggaagaaacttgattttgatatgcgtaattgttatt |
97 |
Q |
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| T |
19225791 |
tatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgcaaaattgttatt |
19225732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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