View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7137_low_1 (Length: 390)

Name: NF7137_low_1
Description: NF7137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7137_low_1
NF7137_low_1
[»] chr4 (3 HSPs)
chr4 (16-344)||(35342172-35342500)
chr4 (25-211)||(35357387-35357581)
chr4 (213-282)||(35357303-35357371)
[»] scaffold0599 (1 HSPs)
scaffold0599 (349-390)||(2456-2501)
[»] scaffold0042 (1 HSPs)
scaffold0042 (349-390)||(12098-12143)
[»] chr7 (1 HSPs)
chr7 (349-390)||(28890642-28890687)
[»] chr6 (1 HSPs)
chr6 (349-390)||(3059320-3059365)
[»] chr3 (2 HSPs)
chr3 (349-390)||(11910762-11910807)
chr3 (349-390)||(52032201-52032246)
[»] chr2 (1 HSPs)
chr2 (349-390)||(22051313-22051358)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 35342172 - 35342500
Alignment:
Q  16 acatgcatgatgcaacctcctacagattcaatgcacatacttaacacacacatgtaaaagtgttaaaaaccaataccatcacaacatttacagtgttatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35342172 acatgcatgatgcaacctcctacagattcaatgcacatacttaagacacacatgtaaaagtgttaaaaaccaataccatcacaacatttacagtgttatt 35342271  T
Q  116 tacactgaaagcgtaatgaatgtgacttgttcacaaagtttaacnnnnnnncaactaactgaattttatgatattttagcattgaatgacagaataacat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35342272 tacactgaaagcgtaatgaatgtgacttgttcacaaagtttaacaaaaaaacaactaactgaattttatgatattttagcattgaatgacagaataacat 35342371  T
Q  216 gttggttgaaaaccacaagtagttgaaacttgaaggcaaagaacactgcatatactaaaagtgaaaaatccagtaacattaacctttaaaatcacatgta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35342372 gttggttgaaaaccacaagtagttgaaacttgaaggcaaagaacactgcatatactaaaagtgaaaaatccagtaacattaacctttaaaatcacatgta 35342471  T
Q  316 tacagtagattaccggtgcattcatttta 344  Q
    |||||||||||||| ||||||||||||||    
T  35342472 tacagtagattaccagtgcattcatttta 35342500  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 35357581 - 35357387
Alignment:
Q  25 atgcaacctcctacagattcaatgcacatacttaacacacacatgtaaaagtgttaaaaaccaataccatcacaacatttacag-----tgttatttaca 119  Q
    |||||||||| | |||||||| |||||||||||||| ||  |||||||||||||| |||||||||||||||||||||| |||||     |  || | | |    
T  35357581 atgcaacctcatgcagattcattgcacatacttaactcaagcatgtaaaagtgtttaaaaccaataccatcacaacatatacaggcactttatagtgaaa 35357482  T
Q  120 ctgaaagcgtaatgaatgtgacttgttcacaaagtttaacnnnnnnncaactaac---tgaattttatgatattttagcattgaatgacagaata 211  Q
     |||||||||||||||||||||| ||||||||||||||||       |||| |||   |||||||||||||||||||||||||| | ||||||||    
T  35357481 gtgaaagcgtaatgaatgtgactcgttcacaaagtttaacaaaaaaacaaccaactaatgaattttatgatattttagcattgattaacagaata 35357387  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 35357371 - 35357303
Alignment:
Q  213 catgttggttgaaaaccacaagtagttgaaacttgaaggcaaagaacactgcatatactaaaagtgaaaa 282  Q
    |||||||||||||  ||||||||||||| |||||| ||| |||| ||||||||||| | ||||| |||||    
T  35357371 catgttggttgaat-ccacaagtagttggaacttggaggaaaagtacactgcatatcccaaaagcgaaaa 35357303  T

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Target: scaffold0599 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 2456 - 2501
Alignment:
Q  349 taatcctagcaatttaccc----attgtttaatcatttaaaatttc 390  Q
    |||||||||||||||||||    |||||||||||||||||||||||    
T  2456 taatcctagcaatttacccttgcattgtttaatcatttaaaatttc 2501  T

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Target: scaffold0042 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 12143 - 12098
Alignment:
Q  349 taatcctagcaatttaccc----attgtttaatcatttaaaatttc 390  Q
    |||||||||||||||||||    |||||||||||||||||||||||    
T  12143 taatcctagcaatttacccttgcattgtttaatcatttaaaatttc 12098  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 28890642 - 28890687
Alignment:
Q  349 taatcctagcaatttaccc----attgtttaatcatttaaaatttc 390  Q
    |||||||||||||||||||    |||||||||||||||||||||||    
T  28890642 taatcctagcaatttacccttgcattgtttaatcatttaaaatttc 28890687  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 3059320 - 3059365
Alignment:
Q  349 taatcctagcaatttaccc----attgtttaatcatttaaaatttc 390  Q
    |||||||||||||||||||    |||||||||||||||||||||||    
T  3059320 taatcctagcaatttacccttgcattgtttaatcatttaaaatttc 3059365  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 11910762 - 11910807
Alignment:
Q  349 taatcctagcaatttaccc----attgtttaatcatttaaaatttc 390  Q
    |||||||||||||||||||    |||||||||||||||||||||||    
T  11910762 taatcctagcaatttacccttgcattgtttaatcatttaaaatttc 11910807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 52032201 - 52032246
Alignment:
Q  349 taatcctagcaatttaccc----attgtttaatcatttaaaatttc 390  Q
    |||||||||||||||||||    |||||||||||||||||||||||    
T  52032201 taatcctagcaatttacccttgcattgtttaatcatttaaaatttc 52032246  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 22051358 - 22051313
Alignment:
Q  349 taatcctagcaatttaccc----attgtttaatcatttaaaatttc 390  Q
    |||||||||||||||||||    |||||||||||||||||||||||    
T  22051358 taatcctagcaatttacccttgcattgtttaatcatttaaaatttc 22051313  T

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