View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7137_low_3 (Length: 353)
Name: NF7137_low_3
Description: NF7137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7137_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 40113394 - 40113065
Alignment:
| Q |
8 |
aagcaaaggattgttcttatctcaacataaatttattagaaaaattcttgagaaatttgatatggatggtgcaaaaccagcgcccacacctttgtcacca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40113394 |
aagcaaaggattgttcttatctcaacataaatttattagagaaattcttgagaaatttgatatggatggtgcaaaaccagcgcccacacctttgtcacca |
40113295 |
T |
|
| Q |
108 |
acagctatcctcaccattcatgatggcaccaccgccactaaccccacacactacagaaaaattcttggctcccttcagtatctcaacctgacacggcctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40113294 |
acagctatcctcaccattcatgatggcaccaccgccactaaccccacacactacagaaaaattcttggctcccttcagtatctcaatctgacacggcctg |
40113195 |
T |
|
| Q |
208 |
atctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacattaagggaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40113194 |
atctctcatttgcaatcaacaagctctcccaattcatgcataaacctatatcccttcatcttcaacatttaaagcggctacttcgctacattaagggaac |
40113095 |
T |
|
| Q |
308 |
cattaactttggcatactcttaaagaaacc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40113094 |
cattaactttggcatactcttaaagaaacc |
40113065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 9005025 - 9004961
Alignment:
| Q |
192 |
aacctgacacggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctac |
256 |
Q |
| |
|
||||| |||||||| ||| |||||||||| ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
9005025 |
aacctcacacggcccgatgtctcatttgctgtcaacaaactctctcaattcatgcacaaacctac |
9004961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 2662377 - 2662465
Alignment:
| Q |
202 |
ggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctactt |
290 |
Q |
| |
|
||||||| || || ||||| |||||||| ||||| |||||||||||||| |||||| || ||| |||||||| | || ||||||||| |
|
|
| T |
2662377 |
ggcctgacctttcctttgccatcaacaaactctctcaattcatgcataagcctacaagtctccattttcaacatctcaaacggctactt |
2662465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 6406839 - 6407168
Alignment:
| Q |
8 |
aagcaaaggattgttcttatctcaacataaatttattagaaaaattcttgagaaatttgatatggatggtgcaaaaccagcgcccacacctttgtcacca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6406839 |
aagcaaaggattgttcttatctcaacataaatttattagagaaattcttgagaaatttgatatggatggtgcaaaaccagcgcccacacctttgtcacca |
6406938 |
T |
|
| Q |
108 |
acagctatcctcaccattcatgatggcaccaccgccactaaccccacacactacagaaaaattcttggctcccttcagtatctcaacctgacacggcctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6406939 |
acagctatcctcaccattcatgatggcaccaccgccactaactccacacactacagaaaaattcttggctcccttcagtatctcaacctgacacgacctg |
6407038 |
T |
|
| Q |
208 |
atctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacattaagggaac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407039 |
atctctcatttgcaatcaacaagctctcccaattcttgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacattaagggaac |
6407138 |
T |
|
| Q |
308 |
cattaactttggcatactcttaaagaaacc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6407139 |
cattaactttggcatactcttaaagaaacc |
6407168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 654322 - 654205
Alignment:
| Q |
205 |
ctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacattaaggg |
304 |
Q |
| |
|
||||||| ||| |||| ||||||||||| || ||||||||| | ||||| ||||| |||||||| |||||| ||||| | |||||||| || | |||| |
|
|
| T |
654322 |
ctgatctttcaattgccatcaacaagctttctcaattcatgtacaaaccaacatcacttcatctgcaacatctaaagagactacttcgttatctaaaggc |
654223 |
T |
|
| Q |
305 |
aaccattaactttggcat |
322 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
654222 |
taccattaattttggcat |
654205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 3019431 - 3019532
Alignment:
| Q |
189 |
ctcaacctgacacggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctac |
288 |
Q |
| |
|
||||| || ||| ||||||| || || ||||| |||||||| ||||| |||||||||||||| |||||| || ||| |||||||| | || ||||||| |
|
|
| T |
3019431 |
ctcaatctcacaaggcctgacctttcctttgccatcaacaaactctctcaattcatgcataagcctacaagtctccattttcaacatctcaaacggctac |
3019530 |
T |
|
| Q |
289 |
tt |
290 |
Q |
| |
|
|| |
|
|
| T |
3019531 |
tt |
3019532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University