View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7138_high_6 (Length: 415)
Name: NF7138_high_6
Description: NF7138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7138_high_6 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 6 - 403
Target Start/End: Complemental strand, 18370450 - 18370050
Alignment:
| Q |
6 |
aaaaacaagtcttagcttcggatgtacctggttcaagccctgaaaatatttatttgattgcattggtacagggagctggacatactgttccagaatacaa |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18370450 |
aaaaacaagtcttagcttcggatgtacctggttcaagccctgaaaatatttatttgattgcattggtacagggagctggacatactgttccagaatacaa |
18370351 |
T |
|
| Q |
106 |
accacaagaggcattggatttttataaacgttttctggctggatccccaatatgagagacagtgatactgctatggatattccatgaactatatagatga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18370350 |
accacaagaggcattggatttttataaacgttttctggctggatccccaatatgagagacagtgatactgctatggatattccatgaactatatagatga |
18370251 |
T |
|
| Q |
206 |
tttgtgggtatatgtatatgctgacattatattattgctagatttaaatgtttccaaattttcatgtttgaagtaaggttatggcaattagattaataga |
305 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18370250 |
tttgtgggtatatgtatatgttgacattatattactgctagatttaaatgtttccaaattttcatgtttgaagtaaggttatggcaattagattaataga |
18370151 |
T |
|
| Q |
306 |
c---ttttcatcgatttgagattggacggttcagaatatacaataacaaatcatcttaaataaatctcgatcgatagtttgagattggacggttgtgatg |
402 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
18370150 |
ctttttttcatcgatttgagattggacggttcagaatatacaataacaaatcatcttaaataaatctcgatcgataatttgagattggacggttgagatg |
18370051 |
T |
|
| Q |
403 |
t |
403 |
Q |
| |
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| |
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|
| T |
18370050 |
t |
18370050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 370
Target Start/End: Complemental strand, 18375013 - 18374646
Alignment:
| Q |
6 |
aaaaacaagtcttagcttcggatgtacctggttcaagccctgaaaatatttatttgattgcattggtacagggagctggacatactgttccagaatacaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18375013 |
aaaaacaagtcttagcttcggatgtacctggttcaagccctgaaaatatttatttgattgcattggtacagggagctggacatactgttccagaatacaa |
18374914 |
T |
|
| Q |
106 |
accacaagaggcattggatttttataaacgttttctggctggatccccaatatgagagacagtgatactgctatggatattccatgaactatatagatga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18374913 |
accacaagaggcattggatttttataaacgttttctggctggatccccaatatgagagacagtgatactgctatggatattccatgaactatatagatga |
18374814 |
T |
|
| Q |
206 |
tttgtgggtatatgtatatgctgacattatattattgctagatttaaatgtttccaaattttcatgtttgaagtaaggttatggcaattagattaataga |
305 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18374813 |
tttgtgggtatatgtatatgttgacattatattactgctagatttaaatgtttccaaattttcatgtttgaagtaaggttatggcaattagattaataga |
18374714 |
T |
|
| Q |
306 |
c---ttttcatcgatttgagattggacggttcagaatatacaataacaaatcatcttaaataaatctc |
370 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18374713 |
ctttttttcatcgatttgagattggacggttcagaatatacaataacaaatcatcttaaataaatctc |
18374646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 18365186 - 18364953
Alignment:
| Q |
6 |
aaaaacaagtcttagcttcggatgtacctggttcaagccctgaaaatatttatttgattgcattggtacagggagctggacatactgttccagaatacaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18365186 |
aaaaacaagtcttagcttcggatgtacctggttcaagccctgaaaatatttatttgattgcattggtacagggagctggacatactgttccagaatacaa |
18365087 |
T |
|
| Q |
106 |
accacaagaggcattggatttttataaacgttttctggctggatccccaatatgagagacagtgatactgctatggatattccatgaactatatagatga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18365086 |
accacaagaggcattggatttttataaacgttttctggctggatccccaatat--gagacagtgatactgctatggatattccatgaactatatagatga |
18364989 |
T |
|
| Q |
206 |
tttgtgggtatatgtatatgctgacattatattatt |
241 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
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| T |
18364988 |
tttgtgggtatatgtatatgttgacattatattatt |
18364953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 237 - 403
Target Start/End: Complemental strand, 18364922 - 18364756
Alignment:
| Q |
237 |
ttattgctagatttaaatgtttccaaattttcatgtttgaagtaaggttatggcaattagattaatagacttttcatcgatttgagattggacggttcag |
336 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18364922 |
ttattgctagatttaattgtttccaaattttcatgtttgaagtgaggttatggcaattagattaatatacttttcatcgatttgagattggacggttcag |
18364823 |
T |
|
| Q |
337 |
aatatacaataacaaatcatcttaaataaatctcgatcgatagtttgagattggacggttgtgatgt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
18364822 |
aatatacaataacaaatcatcttaaataaatctcgatcgataatttgagattggacggttgggatgt |
18364756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 3021354 - 3021121
Alignment:
| Q |
6 |
aaaaacaagtcttagcttcggatgtacctggttcaagccctgaaaatatttatttgattgcattggtacagggagctggacatactgttccagaatacaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021354 |
aaaaacaagtcttagcttcggatgtacctggttcaagccctgaaaatatttatttgattgcattggtacagggagctggacatactgttccagaatacaa |
3021255 |
T |
|
| Q |
106 |
accacaagaggcattggatttttataaacgttttctggctggatccccaatatgagagacagtgatactgctatggatattccatgaactatatagatga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021254 |
accacaagaggcattggatttttataaacgttttctggctggatccccaatat--gagacagtgatactgctatggatattccatgaactatatagatga |
3021157 |
T |
|
| Q |
206 |
tttgtgggtatatgtatatgctgacattatattatt |
241 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
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|
| T |
3021156 |
tttgtgggtatatgtatatgttgacattatattatt |
3021121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 237 - 403
Target Start/End: Complemental strand, 3021090 - 3020924
Alignment:
| Q |
237 |
ttattgctagatttaaatgtttccaaattttcatgtttgaagtaaggttatggcaattagattaatagacttttcatcgatttgagattggacggttcag |
336 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3021090 |
ttattgctagatttaattgtttccaaattttcatgtttgaagtgaggttatggcaattagattaatatacttttcatcgatttgagattggacggttcag |
3020991 |
T |
|
| Q |
337 |
aatatacaataacaaatcatcttaaataaatctcgatcgatagtttgagattggacggttgtgatgt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
3020990 |
aatatacaataacaaatcatcttaaataaatctcgatcgataatttgagattggacggttgggatgt |
3020924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 144450 - 144408
Alignment:
| Q |
75 |
agggagctggacatactgttccagaatacaaaccacaagaggc |
117 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
144450 |
agggagctagacatactgttccggaatacaaaccacaagaggc |
144408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 145276 - 145316
Alignment:
| Q |
77 |
ggagctggacatactgttccagaatacaaaccacaagaggc |
117 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| ||||||| |
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| T |
145276 |
ggagctggacatactgttccataatacagaccaaaagaggc |
145316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 18018579 - 18018525
Alignment:
| Q |
75 |
agggagctggacatactgttccagaatacaaaccacaagaggcattggattttta |
129 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| || ||||| ||||||| |
|
|
| T |
18018579 |
agggatctggacatactgttccagaatataaaccacatgaagcatttcattttta |
18018525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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