View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7138_low_1 (Length: 807)
Name: NF7138_low_1
Description: NF7138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7138_low_1 |
 | |
|
| [»] chr6 (21 HSPs) |
| |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 717; Significance: 0; HSPs: 21)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 11 - 807
Target Start/End: Original strand, 11169878 - 11170674
Alignment:
| Q |
11 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169878 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
11169977 |
T |
|
| Q |
111 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169978 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg |
11170077 |
T |
|
| Q |
211 |
gtaggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170078 |
gtaggaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt |
11170177 |
T |
|
| Q |
311 |
gaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtccc |
410 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
11170178 |
gaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctacattgatgtttttacataactccgtccc |
11170277 |
T |
|
| Q |
411 |
actacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttc |
510 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
11170278 |
actacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaattttactcttc |
11170377 |
T |
|
| Q |
511 |
actatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagattgtcgaaaagtccacgactaatccctgagg |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
11170378 |
actatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagactcttactgagattgtcgaaaattccacgactaatcactgagg |
11170477 |
T |
|
| Q |
611 |
agaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctctt |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
11170478 |
agaaatcttcacctttatataaacaatctatctcgatgtcagtcttattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcct |
11170577 |
T |
|
| Q |
711 |
aatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccg |
807 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170578 |
aatggctcttggatctccactaatgtcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccg |
11170674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 11 - 807
Target Start/End: Original strand, 11208700 - 11209496
Alignment:
| Q |
11 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
11208700 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag |
11208799 |
T |
|
| Q |
111 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||| || | |||| ||| ||||| |||| |||||| || | |||| |||| |
|
|
| T |
11208800 |
caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatatt |
11208898 |
T |
|
| Q |
210 |
ggtaggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11208899 |
ggtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatct |
11208998 |
T |
|
| Q |
310 |
tgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcc |
409 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11208999 |
tgaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatgcaactgcctcatctgcattgatgcttttacataactccgtcc |
11209098 |
T |
|
| Q |
410 |
cactacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttactttt |
509 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
11209099 |
cactaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactctt |
11209198 |
T |
|
| Q |
510 |
cactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagattgtcgaaaagtccacgactaatccctgag |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| |||||| | ||||||||||| ||| |
|
|
| T |
11209199 |
cactatcccactatcttctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgagatcgtcgaactttgcacgactaatcgttgac |
11209298 |
T |
|
| Q |
610 |
gagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctct |
709 |
Q |
| |
|
| ||||||| ||||| || ||||||||||||||| || | |||| | ||||| |||||| | | ||||||| ||||||||||||||||||||||| |
|
|
| T |
11209299 |
aaaaaatctttaccttcatttaaacaatctatctcaatgttagtcgcagtattgacagaaagtatcctttttgctctctcgcaagcagtcttcagcctcc |
11209398 |
T |
|
| Q |
710 |
taatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccg |
807 |
Q |
| |
|
||| |||||||||| ||||||||| || | ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11209399 |
taagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccg |
11209496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 807
Target Start/End: Original strand, 11275272 - 11276058
Alignment:
| Q |
21 |
taagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttg |
120 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| || || ||||| || ||||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
11275272 |
taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg |
11275371 |
T |
|
| Q |
121 |
tccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgactt-ttccctattggtaggaatc |
219 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| | ||| | || || |||| |||| | || |||||||||| |||| |||| | |||||||||||| |
|
|
| T |
11275372 |
tccttagttgttttcctctcaccctcataaatactaattgcaacaaatttttggttaggtatagttgtggtgaat-acttcttccttgttggtaggaatc |
11275470 |
T |
|
| Q |
220 |
gtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaactttt |
319 |
Q |
| |
|
|||||||||| |||| |||| |||||| ||| || | |||||||||| |||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
11275471 |
atggtattcctgggaaatattgttttcatgattccccattgtgttttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaactttt |
11275570 |
T |
|
| Q |
320 |
cacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccactaccctt |
419 |
Q |
| |
|
|||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| || |
|
|
| T |
11275571 |
cacaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctgctatgctc |
11275670 |
T |
|
| Q |
420 |
ttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatccca |
519 |
Q |
| |
|
| |||| |||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
11275671 |
attaatttcaaagaaatcaaccaaaaggtcttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatccca |
11275770 |
T |
|
| Q |
520 |
ctatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagattgtcgaaaagtccacgactaatccctgaggagaaatctt |
619 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||| ||| ||||||| ||||| |||||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
11275771 |
ctatctgctatacacttttctacaatttccatgcactggtaaaaaagactcttgttgagatcatcgaactttgcacgactaatcaacgaggagaaatctg |
11275870 |
T |
|
| Q |
620 |
cacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctct |
719 |
Q |
| |
|
||||| | |||||| |||||||| || ||||| | ||||| |||||| | | |||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
11275871 |
taccttggtttaaacattctatctcaatggtagtctcactattgacagaaagtatcctttttactctctcgcaagcagtcttcagcctcctaatggctct |
11275970 |
T |
|
| Q |
720 |
tggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccg |
807 |
Q |
| |
|
|||| ||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11275971 |
tggatctccactaatgtcatttttatgcttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccg |
11276058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 270 - 806
Target Start/End: Original strand, 11196305 - 11196826
Alignment:
| Q |
270 |
tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca |
369 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||||||||| ||| |||| || | ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11196305 |
tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgcc |
11196404 |
T |
|
| Q |
370 |
accgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctgg |
469 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| | |||| | | ||||||||| ||| | ||||||||||||||||||||| | |
|
|
| T |
11196405 |
accgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag |
11196489 |
T |
|
| Q |
470 |
tagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagatt |
569 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| || | ||||||||||| |||||||||||| ||| ||||||||||| ||| || |||| |
|
|
| T |
11196490 |
tagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgatt |
11196589 |
T |
|
| Q |
570 |
cttgctgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaa |
669 |
Q |
| |
|
|||| |||| | || || | | ||||||||| |||| |||||||| ||||| || ||||| ||||||| || ||| | ||||||| ||| |
|
|
| T |
11196590 |
cttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatctataccttgatttaaactccctatctcaatggtggtcgtagtattggaagaa |
11196689 |
T |
|
| Q |
670 |
agtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaa |
769 |
Q |
| |
|
||| | | |||||||||||||||||||| ||||| |||| ||| |||||||||| ||||||||| |||| ||||| || ||| ||||||||||||||| |
|
|
| T |
11196690 |
agtatcctttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaa |
11196789 |
T |
|
| Q |
770 |
aatggttcaccattgcattatcaaagtcttgtccccc |
806 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11196790 |
aatggttcaccattgtattatcaaagtcttgtccccc |
11196826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 430 - 806
Target Start/End: Original strand, 11155997 - 11156373
Alignment:
| Q |
430 |
aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta |
529 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| || | ||||||||||| || |
|
|
| T |
11155997 |
aagaaatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta |
11156096 |
T |
|
| Q |
530 |
tacacttttctacactctccatgcaccggtcaaaaagattcttgctgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttata |
629 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| || |||||||| |||| | || || | ||||||||||| |||| |||||||| ||||| || |
|
|
| T |
11156097 |
tacacttttccacaatctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcacgactaatcgatgagtagaaatctataccttgatt |
11156196 |
T |
|
| Q |
630 |
taaacaatctatctcgatctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatcca |
729 |
Q |
| |
|
||||| ||||||| || || | ||||||| |||||| | | |||||||||||||||||||| ||||| |||| ||| |||||||||| |||| |
|
|
| T |
11156197 |
taaactctctatctgaatggtggttgtaatattggaagaaagtatcctttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctcca |
11156296 |
T |
|
| Q |
730 |
ctaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtccccc |
806 |
Q |
| |
|
||||| |||| ||||| || ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11156297 |
ctaatgtcgattttatacttcctcgagaactcattcacaaaatggttcaccattgtattatcaaagtcttgtccccc |
11156373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 430 - 805
Target Start/End: Original strand, 11160864 - 11161239
Alignment:
| Q |
430 |
aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta |
529 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||| || | ||||||||||| || |
|
|
| T |
11160864 |
aagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta |
11160963 |
T |
|
| Q |
530 |
tacacttttctacactctccatgcaccggtcaaaaagattcttgctgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttata |
629 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| || |||||||| |||| | || || | | ||||||||| |||| |||||||| |||| || |
|
|
| T |
11160964 |
tacacttttctacaatctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatctattccttgatt |
11161063 |
T |
|
| Q |
630 |
taaacaatctatctcgatctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatcca |
729 |
Q |
| |
|
||||| |||||||| || ||| | ||||||| |||||| | | |||||||||||||||||||| |||| |||| ||| |||||||||| |||| |
|
|
| T |
11161064 |
taaactctctatctcaatggtggtcgtagtattggaagaaagtatcctttttgctttctcgcaagcagagttcaacctcctaagggctcttggatctcca |
11161163 |
T |
|
| Q |
730 |
ctaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccc |
805 |
Q |
| |
|
||||| |||| ||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11161164 |
ctaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccc |
11161239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 659 - 806
Target Start/End: Original strand, 11199844 - 11199991
Alignment:
| Q |
659 |
tattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaa |
758 |
Q |
| |
|
||||||| |||||| | | |||||||||||||||||||| |||| |||| ||| |||||||||| ||||||||| |||| ||||| || ||| |||| |
|
|
| T |
11199844 |
tattggaagaaagtatcctttttgctttctcgcaagcagacttctacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaa |
11199943 |
T |
|
| Q |
759 |
ctctttcacaaaatggttcaccattgcattatcaaagtcttgtccccc |
806 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11199944 |
ctctttcacaaaatggttcaccattgtattatcaaagtcttgtccccc |
11199991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 430 - 782
Target Start/End: Complemental strand, 11241864 - 11241511
Alignment:
| Q |
430 |
aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta |
529 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||| || | ||||||||||| || |
|
|
| T |
11241864 |
aagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta |
11241765 |
T |
|
| Q |
530 |
tacacttttctacactctccatgcaccggtcaaaaagattcttgctgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttata |
629 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| || |||||||| |||| | || || | | ||||||||| |||| |||||||| ||||| || |
|
|
| T |
11241764 |
tacacttttccacaatctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatctataccttgatt |
11241665 |
T |
|
| Q |
630 |
taaacaatctatctcgatctcagtctgattattggatgaaagtgtac-attttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatcc |
728 |
Q |
| |
|
||||| |||||||| || ||| | ||||||| ||||| | | |||||||||||||||||||| ||||| |||| ||| |||||||||| || |
|
|
| T |
11241664 |
taaactctctatctcaatggtggtcgtagtattggaataaagtatccttttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctct |
11241565 |
T |
|
| Q |
729 |
actaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccat |
782 |
Q |
| |
|
|||||| |||| ||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
11241564 |
actaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccat |
11241511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 457 - 555
Target Start/End: Complemental strand, 11315147 - 11315049
Alignment:
| Q |
457 |
tttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac |
555 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||| || || ||||||||||| |||| ||||||||||||| ||| ||||||| |
|
|
| T |
11315147 |
tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcac |
11315049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 430 - 555
Target Start/End: Original strand, 11199440 - 11199565
Alignment:
| Q |
430 |
aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta |
529 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||| || | ||||||||||| || |
|
|
| T |
11199440 |
aagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta |
11199539 |
T |
|
| Q |
530 |
tacacttttctacactctccatgcac |
555 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
11199540 |
tacacttttctacaatctccatgcac |
11199565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 726 - 807
Target Start/End: Original strand, 11133017 - 11133098
Alignment:
| Q |
726 |
tccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccg |
807 |
Q |
| |
|
||||||||| || | |||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11133017 |
tccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccg |
11133098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 428 - 500
Target Start/End: Original strand, 11132719 - 11132791
Alignment:
| Q |
428 |
caaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaat |
500 |
Q |
| |
|
||||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
11132719 |
caaagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaat |
11132791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 11160719 - 11160850
Alignment:
| Q |
270 |
tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca |
369 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||||||||| ||| |||| | | ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11160719 |
tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatgcc |
11160818 |
T |
|
| Q |
370 |
accgcctcatctgcattgatgcttttacataa |
401 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| |
|
|
| T |
11160819 |
actgcctcatcgacattgatgcttttgcataa |
11160850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 11155921 - 11155983
Alignment:
| Q |
339 |
tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa |
401 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
11155921 |
tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa |
11155983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 11199364 - 11199426
Alignment:
| Q |
339 |
tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa |
401 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
11199364 |
tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa |
11199426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
| Q |
82 |
ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat |
154 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
11196117 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat |
11196189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 11315240 - 11315188
Alignment:
| Q |
349 |
tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
11315240 |
tggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataa |
11315188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 11242009 - 11241878
Alignment:
| Q |
270 |
tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca |
369 |
Q |
| |
|
|||||||||||||| | |||| ||| |||| |||||||||| ||| |||| || | ||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
11242009 |
tccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgccatatgcc |
11241910 |
T |
|
| Q |
370 |
accgcctcatctgcattgatgcttttacataa |
401 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| |
|
|
| T |
11241909 |
acagcctcatcgacattgatgcttttgcataa |
11241878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 11319866 - 11319818
Alignment:
| Q |
287 |
tgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccact |
335 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
11319866 |
tgacttccctcaatgtcaaatcttgaaacttttcacaaaactcaccact |
11319818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
| Q |
109 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
158 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||| |||||||||||||| |
|
|
| T |
11155697 |
agcaagttgttttccctagttattttcctctcaccttcataaacatgaat |
11155746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 11132652 - 11132711
Alignment:
| Q |
346 |
gcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactcc |
405 |
Q |
| |
|
|||||||||||||| ||| |||||| || ||||||||||| |||||||| ||||||||| |
|
|
| T |
11132652 |
gcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc |
11132711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 157; Significance: 5e-83; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 361 - 805
Target Start/End: Original strand, 546 - 990
Alignment:
| Q |
361 |
ccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcactttta |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| || | |||| |||||||||||| |||||| ||| ||||||| |
|
|
| T |
546 |
ccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctactatgctcattaatttcaaagaaatcaaccaaaaggccttgaactttta |
645 |
T |
|
| Q |
461 |
caatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtc |
560 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| |||||| || ||||||||||||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
646 |
caatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcactggtt |
745 |
T |
|
| Q |
561 |
aaaaagattcttgctgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgatta |
660 |
Q |
| |
|
||||||| ||||| |||||| || || | ||||||||||| |||||||||| | ||||| | |||||| |||||||| || ||||| | || |
|
|
| T |
746 |
aaaaagactcttgttgagatcatcaaactttgcacgactaatcgacgaggagaaatttgtaccttggtttaaacactctatctcaatggtagtctaagta |
845 |
T |
|
| Q |
661 |
ttggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaact |
760 |
Q |
| |
|
||| |||||| | | ||||| | |||| |||||||||||||||||| ||| |||||||||| ||||||||| |||| ||||| || || |||||| |
|
|
| T |
846 |
ttgacagaaagtatcctttttgatctctcacaagcagtcttcagcctcctaacggctcttggatctccactaatgtcgattttatacttccttaagaaca |
945 |
T |
|
| Q |
761 |
ctttcacaaaatggttcaccattgcattatcaaagtcttgtcccc |
805 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
946 |
ctttcacaaaatggttcaccattgcgttatcaaagtcttgccccc |
990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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