View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7138_low_2 (Length: 579)
Name: NF7138_low_2
Description: NF7138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7138_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Complemental strand, 44928144 - 44927602
Alignment:
| Q |
19 |
actagtaaataagctcaaattagcttaatataaacaagcccctaacgttacagcaaatgacatgaatagtgtttaaagtcaaatataccttttcctttgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44928144 |
actagtaaataagctcaaattagcttaatataaacaagcccctaacgttacagcaaatgacatgaatagtgtttaaagtcaaatataccttttcctttgc |
44928045 |
T |
|
| Q |
119 |
ctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatcacttttttcttcatctccagtattggaaacatcttctgatttttcaacttct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44928044 |
ctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatcacttttttcttcatctccagtattggaaacatcttctgatttttcaacttct |
44927945 |
T |
|
| Q |
219 |
gcctcctttttcttctttttctgaaataagtggtggttaatgttattacttagctttacagcgcacatgaacactatacatttgatggagatcattttaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44927944 |
gcctcctttttcttctttttctgaaataagtggtggttaatgttattacttagctttacagtgcacatgaacactatacatttgatggagatcattttaa |
44927845 |
T |
|
| Q |
319 |
caatcacattattatatgtaatagtttagcatctattatttctttttccttctcctgttgcattagctccttaatggggcgataggctgcagtggtgcac |
418 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44927844 |
caatcacattattatatgtaatagtttagcatctaccatttctttttccttctcctgttgcattagctccttaatggggcgataggctgcagtggtgcac |
44927745 |
T |
|
| Q |
419 |
aagttctgtttacagaaattaatgtcaagagatcattatcacgacaaaccagaagtagggaatatatgaaaaagagaatgacaaacaaactgaaccttaa |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44927744 |
aagttctgtttacagaaattaatgtcaagagatcattatcacgacaaaccagaagcaggga--atatgaaaaagagaatgacaaacaaactgaaccttaa |
44927647 |
T |
|
| Q |
519 |
ggtcgcttccactatatccttctgtcatagttgaaagctctttga |
563 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44927646 |
ggtcgcttccactatatccttctgtcatagttgaaagctctttga |
44927602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 356 - 560
Target Start/End: Complemental strand, 44936260 - 44936064
Alignment:
| Q |
356 |
atttctttttccttctcctgttgcattagctccttaatggggcgataggctgcagtggtgcacaagttctgtttacagaaattaatgtcaagagatcatt |
455 |
Q |
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| T |
44936260 |
atttctttttccttctcctgttgtattagctccttaagggggcgatatgctgcagtcatgcacaagttctgtttacagaaattaatgtcaatag---att |
44936164 |
T |
|
| Q |
456 |
atcacgacaaaccagaagtagggaatatatgaaaaagagaatgacaaacaaactgaaccttaaggtcgcttccactatatccttctgtcatagttgaaag |
555 |
Q |
| |
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||||| || ||| |||||||||| || |||| ||||| || || ||| | ||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
44936163 |
atcaccaccaac---aagtagggaa-cta-gaaattgagaaagatcaataaaattaaccttaagatcacttccgctatatccttctgtcatagttgaaag |
44936069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 383 - 563
Target Start/End: Complemental strand, 45989614 - 45989441
Alignment:
| Q |
383 |
agctccttaatggggcgataggctgcagtggtgcacaagttctgtttacagaaattaatgtcaagagatcattatcacgacaaaccagaagtagggaata |
482 |
Q |
| |
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|||||||||| || || ||| |||||||| |||||||||||||||||||| ||||||||||||| |||| |||||| ||||| ||||||||| || |
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| T |
45989614 |
agctccttaagggcgcaatatgctgcagtcgtgcacaagttctgtttacataaattaatgtcaatagat---tatcaccacaaa--agaagtaggtaac- |
45989521 |
T |
|
| Q |
483 |
tatgaaaaagagaatgacaaacaaactgaaccttaaggtcgcttccactatatccttctgtcatagttgaaagctctttga |
563 |
Q |
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|| |||| |||||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
45989520 |
ta-gaaatagagaatgaccaacaaaatgaaccttaagatcacttccactatatccttctgtcatagttgaaagctctttga |
45989441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 45994476 - 45994358
Alignment:
| Q |
356 |
atttctttttccttctcctgttgcattagctccttaatggggcgataggctgcagtggtgcacaagttctgtttacagaaattaatgtcaagagatcatt |
455 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||| |||||| |||| |||||||| || || |
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| T |
45994476 |
atttctttttctttctcctgttgtattagctccttaagggggcgatatgctgcagtcatgcacaagttctctttacataaatcaatgtcaatag---gtt |
45994380 |
T |
|
| Q |
456 |
atcacgacaaaccagaagtagg |
477 |
Q |
| |
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||||| ||||||||||| |||| |
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| T |
45994379 |
atcaccacaaaccagaaatagg |
45994358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 44936468 - 44936329
Alignment:
| Q |
113 |
ctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatcacttttttcttcatctccagtattggaaacatcttctgatttttca |
212 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||| || || | ||||| | |||||| | ||||| |
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| T |
44936468 |
ctttgcctctctcatgtcctccatgtttaaaggcctgagggcaatcacttgatcttctttatcttcttcggtagcaatggaagcttcttctaagatttca |
44936369 |
T |
|
| Q |
213 |
acttctgcctcctttttcttctttttctgaaataagtggt |
252 |
Q |
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||||||| | |||||||||||||| ||| |||||| |||| |
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| T |
44936368 |
acttctgtcacctttttcttctttgtctaaaataaatggt |
44936329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 45989847 - 45989794
Alignment:
| Q |
113 |
ctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatc |
166 |
Q |
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||||||||||||||||||||||||||| | ||||| ||||| |||||||||||| |
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| T |
45989847 |
ctttgcctgtctcatgtcttccatgttcaaaggccggagggaaatcacttgatc |
45989794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 563
Target Start/End: Complemental strand, 45994349 - 45994291
Alignment:
| Q |
509 |
tgaaccttaaggtcgcttccactatatcctt----ctgtcatagttgaaagctctttga |
563 |
Q |
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||||||||||| || |||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
45994349 |
tgaaccttaagatcacttccactgtatccttaattctgtcatagttgaaagctctttga |
45994291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 329
Target Start/End: Complemental strand, 27404235 - 27404030
Alignment:
| Q |
113 |
ctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatcacttttttcttcatctccagtattggaaacatcttctgatttttca |
212 |
Q |
| |
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|||||| |||||||||||||||||||||| |||| |||| |||| |||||||| | | ||| ||| ||||| ||| ||||||||| ||||| |
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| T |
27404235 |
ctttgcatgtctcatgtcttccatgtttaaaggcgcaagggaaatcccttgatcatcgatatgttcttctatagtatcagaagcatcttctgcgatttca |
27404136 |
T |
|
| Q |
213 |
acttctgcctcctttttcttctttttctgaaataagtggtggttaatgttattacttagctttacagcgcacatgaacactatacatttgatggagatca |
312 |
Q |
| |
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| ||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||| | |||| |||| || ||||| ||| ||||||| |
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| T |
27404135 |
aattctgcctcctctttcttcttttcctgaaataagtg---------gttattacttagttttacatcacaca--aacaatacacattggatagagatca |
27404047 |
T |
|
| Q |
313 |
ttttaacaatcacatta |
329 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
27404046 |
ttttaacaatcacatta |
27404030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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