View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7138_low_3 (Length: 547)

Name: NF7138_low_3
Description: NF7138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7138_low_3
NF7138_low_3
[»] chr6 (18 HSPs)
chr6 (162-532)||(33644976-33645346)
chr6 (352-532)||(33387565-33387744)
chr6 (352-532)||(33285002-33285181)
chr6 (388-532)||(9166189-9166333)
chr6 (381-532)||(33303917-33304068)
chr6 (319-460)||(33261975-33262117)
chr6 (356-462)||(33407777-33407882)
chr6 (357-453)||(28870678-28870772)
chr6 (352-469)||(33271233-33271349)
chr6 (352-453)||(33409377-33409477)
chr6 (381-462)||(33396851-33396932)
chr6 (352-469)||(33398465-33398581)
chr6 (374-453)||(33358345-33358423)
chr6 (291-447)||(33056908-33057062)
chr6 (402-532)||(31563251-31563381)
chr6 (381-462)||(33281153-33281234)
chr6 (163-205)||(33056858-33056900)
chr6 (19-73)||(33648495-33648549)
[»] chr2 (2 HSPs)
chr2 (375-514)||(17441343-17441482)
chr2 (356-430)||(17446954-17447027)
[»] scaffold1408 (1 HSPs)
scaffold1408 (319-462)||(2-146)
[»] scaffold0428 (2 HSPs)
scaffold0428 (319-462)||(5748-5892)
scaffold0428 (381-462)||(13018-13099)
[»] chr4 (5 HSPs)
chr4 (374-451)||(31479558-31479635)
chr4 (374-469)||(31473099-31473195)
chr4 (386-453)||(31525791-31525858)
chr4 (364-430)||(31499587-31499652)
chr4 (394-451)||(31485298-31485355)


Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 162 - 532
Target Start/End: Complemental strand, 33645346 - 33644976
Alignment:
Q  162 cacttcatggtatgaagcagaacatatacccatgaaaatatgtttgtattttgcaggttgatgacaaccaatgagtaggtggcaacagatagatgattct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33645346 cacttcatggtatgaagcagaacatatacccatgaaaatatgtttgtattttgcaggttgatgacaaacaatgagtaggtggcaacagatagatgattct 33645247  T
Q  262 tgttcaatttgttgagactcttcattaccttcttatctgtgaagtggttatggctgcggttgtggttctgcctcatcttcatacccaaaccttacacttc 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645246 tgttcaatttgttgagactcttcattaccttcttatctgtgaagtggttatggctgcggttgtggttctgcctcatcttcatacccaaaccttacacttc 33645147  T
Q  362 ggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcataccc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645146 ggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcataccc 33645047  T
Q  462 aaaccttccccctcaaaaatgtcaaaatggatttttccaaattcattataggaatctcgagggaagtagat 532  Q
    | |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  33645046 agaccttccctctcaaaaatgtcaaaatagattcttccaaattcattataggaatctcgagggaagtagat 33644976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 352 - 532
Target Start/End: Original strand, 33387565 - 33387744
Alignment:
Q  352 cttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac 451  Q
    ||||||||||||||| ||||| ||||| |||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||    
T  33387565 cttacacttcggagccaagga-attttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcac 33387663  T
Q  452 cttcatacccaaaccttccccctcaaaaatgtcaaaatggatttttccaaattcattataggaatctcgagggaagtagat 532  Q
    || |||||||||| ||| ||||| |||||||||||||  ||| |||||||||||||   |||| ||||| |||||||||||    
T  33387664 ctccatacccaaagcttgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagat 33387744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 352 - 532
Target Start/End: Original strand, 33285002 - 33285181
Alignment:
Q  352 cttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac 451  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||||    
T  33285002 cttacacttcggagccaaggatatttt-gtgattcatcattgttaaattgaactcttgtaggtcttgtttacatacccaacgatatccacaactgttcac 33285100  T
Q  452 cttcatacccaaaccttccccctcaaaaatgtcaaaatggatttttccaaattcattataggaatctcgagggaagtagat 532  Q
    || |||||||||| |||| ||| ||| ||||| | ||  ||||||| |||||| || |||||| |||| || || ||||||    
T  33285101 ctccatacccaaatcttcacccccaacaatgtaacaactgattttttcaaatttatcataggactctctagagaggtagat 33285181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 388 - 532
Target Start/End: Original strand, 9166189 - 9166333
Alignment:
Q  388 tcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcatacccaaaccttccccctcaaaaatgtcaaa 487  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||||||| |||  || |||||||||    
T  9166189 tcatcgttaagttgaactcttgtaggtcttgtttacatacccaacggtatccacaagtcttcaccttcatatccaaaccttcaccccgaataatgtcaaa 9166288  T
Q  488 atggatttttccaaattcattataggaatctcgagggaagtagat 532  Q
    ||||||||||||||||||||  ||||| ||||| |||| ||||||    
T  9166289 atggatttttccaaattcatcgtaggactctcgggggaggtagat 9166333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 381 - 532
Target Start/End: Original strand, 33303917 - 33304068
Alignment:
Q  381 tgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcatacccaaaccttccccctcaaaaa 480  Q
    ||||||||||||||||||||||| | ||| ||||||| |||||||||||| |||||||| ||||||||||||| || ||  ||| |||| ||||||||||    
T  33303917 tgattcatcattgttaagttgaattcttgcaggtcttctttacatacccaccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaa 33304016  T
Q  481 tgtcaaaatggatttttccaaattcattataggaatctcgagggaagtagat 532  Q
    | | ||||||||||||| |||||||| ||||||| ||||| |||||||||||    
T  33304017 tattaaaatggattttttcaaattcactataggactctcgggggaagtagat 33304068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 319 - 460
Target Start/End: Original strand, 33261975 - 33262117
Alignment:
Q  319 ggttgtggttctgcctcatcttca--tacccaaaccttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtct 416  Q
    |||||||||| || ||||||||||  | || ||| |||||| |||| ||| |||||| ||||  ||||||||||||||||||||||||| ||||||||||    
T  33261975 ggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggat-ttttcatgattcatcattgttaagttgaactcttgtaggtct 33262073  T
Q  417 tgtttacatacccaacgatacccacaactcttcaccttcatacc 460  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||    
T  33262074 tgtttacatacccaatgatacccgcaactcttcacctccatacc 33262117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 356 - 462
Target Start/End: Original strand, 33407777 - 33407882
Alignment:
Q  356 cacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttc 455  Q
    |||||| |||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||    
T  33407777 cacttctgagccaagga-attttcgtgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactatacccgcagctcttcaccttc 33407875  T
Q  456 ataccca 462  Q
     ||||||    
T  33407876 gtaccca 33407882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 357 - 453
Target Start/End: Complemental strand, 28870772 - 28870678
Alignment:
Q  357 acttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcacct 453  Q
    ||||| |||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  28870772 acttctgagccaagga-atttttgtg-ttcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacct 28870678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 352 - 469
Target Start/End: Original strand, 33271233 - 33271349
Alignment:
Q  352 cttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac 451  Q
    |||||| || ||||| ||||| ||||| |||||||| ||||||||  ||||||| |||||||||||||||||||| |||||||||||| |||||||||||    
T  33271233 cttacattttggagccaagga-attttcgtgattcagcattgttatattgaactcttgtaggtcttgtttacatatccaacgatacccgcaactcttcac 33271331  T
Q  452 cttcatacccaaaccttc 469  Q
    || ||||||||| |||||    
T  33271332 ctccatacccaagccttc 33271349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 352 - 453
Target Start/End: Original strand, 33409377 - 33409477
Alignment:
Q  352 cttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac 451  Q
    |||||||||| |||| ||||| |||||  |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  33409377 cttacacttctgagccaagga-attttcatgattcatcattgtgaagttgaacttttgtaggtcttgtttacatacccaacgatacccgcaacttttcac 33409475  T
Q  452 ct 453  Q
    ||    
T  33409476 ct 33409477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 33396851 - 33396932
Alignment:
Q  381 tgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcataccca 462  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||  || |||||||||| ||||||||    
T  33396851 tgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactatacctgcagctcttcacctccataccca 33396932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 352 - 469
Target Start/End: Original strand, 33398465 - 33398581
Alignment:
Q  352 cttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac 451  Q
    |||||||||  |||| ||||| |||||  |||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||| |||||||||||    
T  33398465 cttacacttttgagcaaagga-attttcatgattcatcattgtgaagttcaactttcgtaggtcttgtttacatacccaacgatacccgcaactcttcac 33398563  T
Q  452 cttcatacccaaaccttc 469  Q
    ||  | ||||||||||||    
T  33398564 ctcaaaacccaaaccttc 33398581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 453
Target Start/End: Original strand, 33358345 - 33358423
Alignment:
Q  374 atttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcacct 453  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||| | |||||||||||| |||||||||||||||    
T  33358345 attttcgtgattcatcattgtgaagttgaactcttgtaggtcttgttta-aaacccaacgatactcacaactcttcacct 33358423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 447
Target Start/End: Original strand, 33056908 - 33057062
Alignment:
Q  291 ttcttatctgtgaagtggttatggctgcggttgtggttctgcctcatcttca--tacccaaaccttacacttcggagctaaggatatttttgtgattcat 388  Q
    |||||||||||||||| ||||||| ||||||| ||||| || ||||||||||  |  | |||  || ||||| |||| |||||| |||||||||||||||    
T  33056908 ttcttatctgtgaagtagttatggttgcggttctggttgtgtctcatcttcaattgtcaaaattttgcactttggagttaagga-atttttgtgattcat 33057006  T
Q  389 cattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactct 447  Q
     |   |||| ||||| | |||||  ||||||||||||||||||||||| || |||||||    
T  33057007 ga---ttaaattgaattcttgtatatcttgtttacatacccaacgataaccgcaactct 33057062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 402 - 532
Target Start/End: Complemental strand, 31563381 - 31563251
Alignment:
Q  402 aactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcatacccaaaccttccccctcaaaaatgtcaaaatggatttttccaa 501  Q
    |||| ||||||||| |||||||||||||||||||| || |||||||||||| |||||    ||  ||   ||  ||||||||||||||||||||||| ||    
T  31563381 aactcttgtaggtcatgtttacatacccaacgatatccgcaactcttcaccctcataggtgaaattttagccgaaaaaatgtcaaaatggatttttcgaa 31563282  T
Q  502 attcattataggaatctcgagggaagtagat 532  Q
    |||||| |   ||  ||||||||||||||||    
T  31563281 attcatgacgtgaccctcgagggaagtagat 31563251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 33281153 - 33281234
Alignment:
Q  381 tgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcataccca 462  Q
    |||||||| ||||||||  |||||| ||||||||||||||||||||  ||||||| | | ||||||||||||| | ||||||    
T  33281153 tgattcattattgttaaactgaactcttgtaggtcttgtttacatattcaacgatgcacgcaactcttcacctccgtaccca 33281234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 33056858 - 33056900
Alignment:
Q  163 acttcatggtatgaagcagaacatatacccatgaaaatatgtt 205  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  33056858 acttcatggtatgaaacagaacatacacccatgaaaatatgtt 33056900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 33648549 - 33648495
Alignment:
Q  19 taggaatttgaggaattatggaaatgtcactttttagtaaatgaccaaatcatac 73  Q
    ||||||| ||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  33648549 taggaatctgaggaagtgtggaaatgtcactttttggtacatgaccaaatcatac 33648495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 375 - 514
Target Start/End: Complemental strand, 17441482 - 17441343
Alignment:
Q  375 tttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcatacccaaaccttccccct 474  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| |||||    
T  17441482 ttttcgtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctccatacccaaagcttgcccct 17441383  T
Q  475 caaaaatgtcaaaatggatttttccaaattcattatagga 514  Q
    ||||||| |||||| |||||| || |||| ||| ||||||    
T  17441382 caaaaatttcaaaacggatttctcgaaatgcatgatagga 17441343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 17447027 - 17446954
Alignment:
Q  356 cacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacataccca 430  Q
    |||||| |||| ||||| ||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  17447027 cacttctgagccaagga-attttcgttattcaacattgttaagttgaactcttgtaggtcttgtttacataccca 17446954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 319 - 462
Target Start/End: Original strand, 2 - 146
Alignment:
Q  319 ggttgtggttctgcctcatcttca--tacccaaaccttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtct 416  Q
    |||||||||| || ||||||||||  | || ||| |||||| |||| ||| |||||| ||||  ||||||||||||||||||||||||| ||||| || |    
T  2 ggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggat-ttttcatgattcatcattgttaagttgaactcttgtaagttt 100  T
Q  417 tgtttacatacccaacgatacccacaactcttcaccttcataccca 462  Q
    ||||||||||||||||||||||| |||| |||||| | ||||||||    
T  101 tgtttacatacccaacgatacccgcaacacttcacatccataccca 146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 319 - 462
Target Start/End: Original strand, 5748 - 5892
Alignment:
Q  319 ggttgtggttctgcctcatcttca--tacccaaaccttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtct 416  Q
    |||||||||| || ||||||||||  | || ||| |||||| |||| ||| |||||| ||||  ||||||||||||||||||||||||| ||||| || |    
T  5748 ggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggat-ttttcatgattcatcattgttaagttgaactcttgtaagttt 5846  T
Q  417 tgtttacatacccaacgatacccacaactcttcaccttcataccca 462  Q
    ||||||||||||||||||||||| |||| |||||| | ||||||||    
T  5847 tgtttacatacccaacgatacccgcaacacttcacatccataccca 5892  T

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Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 462
Target Start/End: Complemental strand, 13099 - 13018
Alignment:
Q  381 tgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcataccca 462  Q
    |||||||| ||||||||  |||||| ||||||||||||||||||||  ||||||| | | ||||||||||||| | ||||||    
T  13099 tgattcattattgttaaactgaactcttgtaggtcttgtttacatattcaacgatgcacgcaactcttcacctccgtaccca 13018  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 451
Target Start/End: Complemental strand, 31479635 - 31479558
Alignment:
Q  374 atttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac 451  Q
    |||| ||||||||||| ||||||||||||| | |||||| || |||||| | |||||||| ||||||||| |||||||    
T  31479635 atttctgtgattcatctttgttaagttgaattcttgtagatcctgtttataaacccaacggtacccacaattcttcac 31479558  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 469
Target Start/End: Complemental strand, 31473195 - 31473099
Alignment:
Q  374 atttttgtgattcatcattgttaag-ttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcatacccaaaccttc 469  Q
    |||||||||||||||| |||||||| ||| ||| |||||| || | || | |||||||| | ||||||||| |||||||||  ||||||||| ||||    
T  31473195 atttttgtgattcatctttgttaagtttggactcttgtagatcctcttcatatacccaatggtacccacaattcttcacctctatacccaaatcttc 31473099  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 31525791 - 31525858
Alignment:
Q  386 catcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcacct 453  Q
    ||||||||| |||||||  | |||||| || |||||| ||||||||||||| |||||| |||||||||    
T  31525791 catcattgtaaagttgagatgttgtagatcatgtttatatacccaacgataaccacaattcttcacct 31525858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 430
Target Start/End: Complemental strand, 31499652 - 31499587
Alignment:
Q  364 agctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacataccca 430  Q
    |||||||| ||||| |||||||||||||||||||||| |||| |||||| || || ||| |||||||    
T  31499652 agctaagg-tatttctgtgattcatcattgttaagttcaactcttgtagatcatgcttatataccca 31499587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 31485355 - 31485298
Alignment:
Q  394 ttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac 451  Q
    |||||||||||| ||| || || || ||| |||||||||||||||| |||||||||||    
T  31485355 ttaagttgaactcttgcagatcctgcttaaatacccaacgatacccgcaactcttcac 31485298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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