View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7138_low_4 (Length: 500)
Name: NF7138_low_4
Description: NF7138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7138_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 6 - 489
Target Start/End: Complemental strand, 7471182 - 7470699
Alignment:
| Q |
6 |
aaaggcaatgcaaccaagaaaataggaaaataaatgcttcatcttactcttttgttttggtttcttttcaaccaagtcatggaatggtgtttgtgttcca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471182 |
aaaggcaatgcaaccaagaaaataggaaaataaatgcttcatcttactcttttgttttggtttcttttcaaccaagtcatggaatggtgtttgtgttcca |
7471083 |
T |
|
| Q |
106 |
ctctgagattcagcttgagatccagattgatctcgactttcatccaatgtgagactgttaacagcttctgctcctccatcgggtcctagagtctcattct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471082 |
ctctgagattcagcttgagatccagattgatctcgactttcatccaatatgagactgttaacagcttctgctcctccatcgggtcctagagtctcattct |
7470983 |
T |
|
| Q |
206 |
caacaggggacactaagctagctgtcgtatgttgcacatttgaactttcttcttcaatttcgaaatcaacgcgatcagtacagatcggttttatgcttgc |
305 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7470982 |
caacagtggacactaagctagctgtagtatgttgcacatttgaactttcttcttcaatttcgaaatcaacgcgatcagtacagattggttttatgcttgc |
7470883 |
T |
|
| Q |
306 |
aagagcagtaatcttggctgtgtaaagatcaaagagaatccttatcagtatttcagtgatttccgtgaattctggtctgagttttgggtttttatcccaa |
405 |
Q |
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||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7470882 |
aagtgcattaatcttggctgtgtaaagatcaaagagaatgcttatcagtatttcagtgatttccttgaattctggtctgagttttgggtttttatcccaa |
7470783 |
T |
|
| Q |
406 |
caggattccagcagggtgattatttcttctggaaattcggccaaacttggcctgatattctgcaaccattatcaacaacttcat |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7470782 |
caggattccagcagggtgattatttcttctggaaattcagccaaacttggcctgatattctgcaaccattatcaacagcttcat |
7470699 |
T |
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