View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7139_high_10 (Length: 373)
Name: NF7139_high_10
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 357
Target Start/End: Original strand, 39994091 - 39994423
Alignment:
| Q |
25 |
aacagatatagagagtgatagaaccggcaccggatacggtatctatatcaggcagaaaggcatcagacggcaggttgttaacagcgtgatggaaatcgcg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39994091 |
aacagatatagagagtgatagaaccggcaccggatacggtatctatatcaggcagaaaggcatctgacggcaggttgttaacagcgtgatggaaatcgcg |
39994190 |
T |
|
| Q |
125 |
taggttgaaatttcccacgggacggtacgcaatcatcaactacataacaagcagaatcactctcaatcactcactcttacagatcaagatataaacacgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
39994191 |
taggttgaaatttcccacgggacggtacgcaatcatcaactacataacaagcagaatcacgctcaatcactcactcttacggatcaaaatataaacacgt |
39994290 |
T |
|
| Q |
225 |
ctcgtgcatttcgaatttatcaatctaatcacaaattgtnnnnnnnnttctcagaactgaaacattacctcatcggaagaagataaacgattcttcacaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39994291 |
ctcgtgcatttcgaatttatcaatctaatcacgaattgtaaaaaaaattctcagaactgaaacattacctcatcggaagaagataaacgattcttcacaa |
39994390 |
T |
|
| Q |
325 |
cgtaaaacaaaccaatcttatcactcagagtat |
357 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
39994391 |
cgtaacacaaaccgatcttatcactgagagtat |
39994423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University