View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_high_11 (Length: 367)
Name: NF7139_high_11
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_high_11 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 206 - 367
Target Start/End: Original strand, 43712555 - 43712716
Alignment:
| Q |
206 |
gttgctgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcat |
305 |
Q |
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| T |
43712555 |
gttgctgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggactattacccaacatgatattgtatttgatgggatcat |
43712654 |
T |
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| Q |
306 |
acagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttc |
367 |
Q |
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| T |
43712655 |
acagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttc |
43712716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 43712367 - 43712498
Alignment:
| Q |
18 |
caactttgttctgttgatgctgctgatgaagaagaaatggtttctcaacaaaaaccacaaagaagcaagggtggtcttgtcaccatgccttttatcattg |
117 |
Q |
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| T |
43712367 |
caactttgttctgttgatgctgctgatgaagaagaaatggtttctcagcaaaaaccacaaagaagcaagggtggtcttgtcaccatgccttttatcattg |
43712466 |
T |
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| Q |
118 |
gtatcttatctaatatctatgatttgcatgca |
149 |
Q |
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| T |
43712467 |
gtatcttatctaatatctatgatttgcatgca |
43712498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 211 - 367
Target Start/End: Original strand, 43697637 - 43697793
Alignment:
| Q |
211 |
tgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacaga |
310 |
Q |
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| T |
43697637 |
tgttgtgattattttgattgaagggaatgaggcacttgctaggatggcaagtttgggactattaccaaacatgatattgtatttgatgggatcatacaga |
43697736 |
T |
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| Q |
311 |
cttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttc |
367 |
Q |
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| T |
43697737 |
cttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttc |
43697793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 43684911 - 43685042
Alignment:
| Q |
18 |
caactttgttctgttgatgctgctgatgaagaagaaatggtttctcaacaaaaaccacaaagaagcaagggtggtcttgtcaccatgccttttatcattg |
117 |
Q |
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| T |
43684911 |
caactttgttctgttgatgctgctgatgaagaagaaatggtttctcaacaaaaaccagaaagaagcaagggtggtcttgtcaccatgccttttatcattg |
43685010 |
T |
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| Q |
118 |
gtatcttatctaatatctatgatttgcatgca |
149 |
Q |
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| T |
43685011 |
gtatcttatctaatatctataacttgcatgca |
43685042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 43697470 - 43697575
Alignment:
| Q |
21 |
ctttgttctgttgatgctgctgatgaagaagaaatggtttctcaacaaaaaccacaaagaagcaagggtggtcttgtcaccatgccttttatcattggta |
120 |
Q |
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| T |
43697470 |
ctttgttctgttgatgctgctaatgaagaagaaatggtttctcaacaa---ccacaaagacgcaagggtggtcttatcaccatgccttttataattggta |
43697566 |
T |
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| Q |
121 |
tcttatcta |
129 |
Q |
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| T |
43697567 |
tcttatcta |
43697575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 367
Target Start/End: Original strand, 43726181 - 43726312
Alignment:
| Q |
236 |
aatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcaga |
335 |
Q |
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| T |
43726181 |
aatgaggcacttgcaaggatggcaagtttgggactattgcccaatatgatattgtatttcatgggaagttacaggcttcatcttgccaaagctactcaga |
43726280 |
T |
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| Q |
336 |
tacttcttttatcctctgcagctagcaatttc |
367 |
Q |
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| T |
43726281 |
ttcttctcttatcctctgcagctagcaatttc |
43726312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 367
Target Start/End: Original strand, 43685111 - 43685242
Alignment:
| Q |
236 |
aatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcaga |
335 |
Q |
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||||| |||||||||| |||||||||| |||||| ||| ||||||||||||||||| ||||| || |||| ||||| |||| || | |||| |||| |
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| T |
43685111 |
aatgaggcacttgctaggatggcaagtactggattaggacctaacatgatattgtatttgatgggttcttacaatcttcatcttgccacagctacccaga |
43685210 |
T |
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| Q |
336 |
tacttcttttatcctctgcagctagcaatttc |
367 |
Q |
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| T |
43685211 |
tacttctcatatcctctgcagctggaaatttc |
43685242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 43725887 - 43725962
Alignment:
| Q |
51 |
gaaatggtttctcaacaaaaaccacaaagaagcaagggtggtcttgtcaccatgccttttatcattggtatcttatcta |
129 |
Q |
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| T |
43725887 |
gaaatggtttctcaacaa---cctcaaagacgcaagggtggtcttatcaccatgcctttcatcattggtctgttatcta |
43725962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 25270063 - 25270122
Alignment:
| Q |
70 |
aaccacaaagaagcaagggtggtcttgtcaccatgccttttatcattggtatcttatcta |
129 |
Q |
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| T |
25270063 |
aaccacaaaggagcaagggtggtcttatcactatgcctttcatcattggtacgttatcta |
25270122 |
T |
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