View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_high_13 (Length: 324)
Name: NF7139_high_13
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_high_13 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 14786924 - 14786631
Alignment:
| Q |
18 |
aatgtaactataatcatatgcaggtaacgcgtctcaagtgtggtggtttcatatttgctcttcgtctaaaccatacaattagcgactcatcaggtttatt |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14786924 |
aatgtaactataaccatatgcaggtaacgcgtctcaagtgtggtggtttcatatttgctcttcgtctaaaccatacaattagcgactcatcaggtttatt |
14786825 |
T |
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| Q |
118 |
taaattcttaagcgccttaggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccacca |
217 |
Q |
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| T |
14786824 |
taaattcttaagtgccttaggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccacca |
14786725 |
T |
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| Q |
218 |
agaattacgtgtactcatcacgaatatgaagaagtaccacgaaacaaatgaaccgtcattcccttagacgacatggttcatcacactttcttct |
311 |
Q |
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| T |
14786724 |
agaattacgtgtactcatcacgaatatgaagaagtaccacgaaacaaaggaacggtcattcccttagacgacatggttcatcacactttcttct |
14786631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 310
Target Start/End: Original strand, 14758980 - 14759253
Alignment:
| Q |
37 |
gcaggtaacgcgtctcaagtgtggtggtttcatatttgctcttcgtctaaaccatacaattagcgactcatcaggtttatttaaattcttaagcgcctta |
136 |
Q |
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| T |
14758980 |
gcaggtaacacgcctcaagtgtggtggtttcatttttgctttccgtatgaaccatacaatgagtgatggatcaggtatgcttcaattcttgaatgcctta |
14759079 |
T |
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| Q |
137 |
ggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccaccaagaattacgtgtactcatc |
236 |
Q |
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| T |
14759080 |
ggagaaatatctcgtgggatgagtaaaccttcaatctcaccagtgtggagcagagagcttcttaatgcaagggatccaccaatagtgacatgtactcatc |
14759179 |
T |
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| Q |
237 |
acgaatatgaagaagtaccacga-aacaaatgaaccgtcattcccttagacgacatggttcatcacactttcttc |
310 |
Q |
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| T |
14759180 |
gtgaatacgatccagaacc-cgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcactttcttc |
14759253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 310
Target Start/End: Complemental strand, 14878760 - 14878486
Alignment:
| Q |
36 |
tgcaggtaacgcgtctcaagtgtggtggtttcatatttgctcttcgtctaaaccatacaattagcgactcatcaggtttatttaaattcttaagcgcctt |
135 |
Q |
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|||||||||| || ||||||||||||||||| || |||||| ||||| | ||||||||| | || || |||| || | || ||||||| || ||||| |
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| T |
14878760 |
tgcaggtaacacgcctcaagtgtggtggttttatctttgctattcgtatgaaccatacattgagtgatgcatcgggcatgcttcaattcttgagtgcctt |
14878661 |
T |
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| Q |
136 |
aggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccaccaagaattacgtgtactcat |
235 |
Q |
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| T |
14878660 |
aggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggagcagagagcttcttaatgcaagggatccaccaagagtgacatataatcat |
14878561 |
T |
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| Q |
236 |
cacgaatatgaagaagtaccacga-aacaaatgaaccgtcattcccttagacgacatggttcatcacactttcttc |
310 |
Q |
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| T |
14878560 |
cgtgaatacgatccagaacc-cgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcactttcttc |
14878486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 14767820 - 14767645
Alignment:
| Q |
33 |
atatgcaggtaacgcgtctcaagtgtggtggtttcatatttgctcttcgtctaaaccatacaattagcgactcatcaggtttatttaaattcttaagcgc |
132 |
Q |
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||||| ||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || | ||||| | ||||| | || || |
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| T |
14767820 |
atatgtaggtaacacgcctcaagtgcggtggtttcatttttgctcttcgtctaaaccatacaatgagcgatgcagcgggtttggtccaattcatgagtgc |
14767721 |
T |
|
| Q |
133 |
cttaggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaagg |
208 |
Q |
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| T |
14767720 |
cttaggtgaaatttcttgcgggatgaatgaaccttcaatcttaccggtatggcatagggagcttctaaattcaagg |
14767645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 252
Target Start/End: Complemental strand, 14873898 - 14873682
Alignment:
| Q |
36 |
tgcaggtaacgcgtctcaagtgtggtggtttcatatttgctcttcgtctaaaccatacaattagcgactcatcaggtttatttaaattcttaagcgcctt |
135 |
Q |
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|||||||||| ||| | || || ||||||||||| ||||||||||||||||||||||| || || ||| | | ||||| | ||||| | | ||||| |
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| T |
14873898 |
tgcaggtaacacgtttgaaatgcggtggtttcatttttgctcttcgtctaaaccatacgatgagtgacgctgctggtttggtccaattcatgaatgcctt |
14873799 |
T |
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| Q |
136 |
aggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccaccaagaattacgtgtactcat |
235 |
Q |
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||| |||| || || || |||||| |||||||||||||||| || ||| ||||||||||||||| |||||| | ||||||||| | || || |||||| |
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| T |
14873798 |
aggcaaaatttcacgtgggatgaacaaaccttcaatctcaccagtatggcatagagagcttctaaacgcaagggatccaccaagagtaacatgcactcat |
14873699 |
T |
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| Q |
236 |
cacgaatatgaagaagt |
252 |
Q |
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|| ||||||||| |||| |
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| T |
14873698 |
catgaatatgaacaagt |
14873682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 236
Target Start/End: Complemental strand, 84821 - 84621
Alignment:
| Q |
36 |
tgcaggtaacgcgtctcaagtgtggtggtttcatatttgctcttcgtctaaaccatacaattagcgactcatcaggtttatttaaattcttaagcgcctt |
135 |
Q |
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|||||||||| || ||||| ||| | |||||||| |||||||||||| | ||||||||||| | || ||||||| || || ||||| | || || || |
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| T |
84821 |
tgcaggtaacacgcctcaaatgtagaggtttcatttttgctcttcgtttcaaccatacaatgactgatggatcaggtatagttcaattcatgagtgcttt |
84722 |
T |
|
| Q |
136 |
aggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccaccaagaattacgtgtactcat |
235 |
Q |
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|| ||||||||||| || |||| |||||||||||||||| |||||||| ||||| |||||| |||||| | |||||||| | |||||||||||| |
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| T |
84721 |
agcagaaatatctcagggtatgagaaaaccttcaatctcaccagtgtggtgcagagaaattctaagcgcaagggatgcaccaagagtgacgtgtactcat |
84622 |
T |
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| Q |
236 |
c |
236 |
Q |
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| T |
84621 |
c |
84621 |
T |
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