View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7139_high_14 (Length: 319)
Name: NF7139_high_14
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 38611395 - 38611110
Alignment:
| Q |
15 |
aagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38611395 |
aagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttctt |
38611296 |
T |
|
| Q |
115 |
catcctgtggtaataccttttttctacttttgcagttcatcacagtttctgcttgttatctattaatggttgttaaagctgaaaaaatgaaatgtagaaa |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38611295 |
catcctgtggtaataccttttttttacttttgcagttcatcacagtttctgcttcttatctattattggttgttaaagctgaaaaaatgaaatgtagaaa |
38611196 |
T |
|
| Q |
215 |
tataagaccagtcagcgtgatgtggcagaacttcttaacttgacttgcttaacatcacatttctttgctccttgcaagctacagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38611195 |
tataagaccagtcagcgtgatgtggcagaacttcttaacttgacatgcttaacatcacatttctttgctccttgcaagctacagtg |
38611110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 38796075 - 38795899
Alignment:
| Q |
122 |
tggtaataccttt-tttctacttttgcagttcatcacagtttctgcttgttatctattaatggttgttaaagctgaaaaaatgaaatgtagaaatataag |
220 |
Q |
| |
|
||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38796075 |
tggtaatacttttgtttttagttttgcagttcatcacagtttctgcttgttatctattattggttgttaaagctgaaaaaatgaaatgtagaaatataag |
38795976 |
T |
|
| Q |
221 |
accagtcagcgtgatgtggcagaacttcttaacttgacttgcttaacatcacatttctttgctccttgcaagctaca |
297 |
Q |
| |
|
|||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38795975 |
accattaagcgtgatgtggctgaacttcttaacttgacatgcttaacatcacatttctttgctccttgcaagttaca |
38795899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 34730916 - 34730707
Alignment:
| Q |
15 |
aagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttctt |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |||| | ||||| |||| |||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
34730916 |
aagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctgaagcactccaatcaagtcaatcagttttgtcttc-- |
34730819 |
T |
|
| Q |
115 |
catcctgtggtaatacct-tttttc--tacttttgcagttcatcacagtttctgcttgttatctattaatggttgttaaagctgaaaaaatgaaatgtag |
211 |
Q |
| |
|
| |||||||||||| | |||||| || |||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||| | |
|
|
| T |
34730818 |
-acgctgtggtaatacttatttttcaatagttttgcagtttatctcagtttctgcttgttatctatgtttgggtgttaaagctgaaaaaatgaactgtgg |
34730720 |
T |
|
| Q |
212 |
aaatataagacca |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34730719 |
aaatataagacca |
34730707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 34726702 - 34726490
Alignment:
| Q |
15 |
aagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttctt |
114 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||| |||| | |||||||||||||| | || ||||||||||||| ||||| |||||||||| || |
|
|
| T |
34726702 |
aagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatcgtcaagctgtccaatcaagccaatcggctttgtcttatt |
34726603 |
T |
|
| Q |
115 |
catcctgtggtaatac---cttttttctacttttgcagttcatcacagtttctgcttgttatctattaatggttgttaaagctgaaaaaatgaaatgtag |
211 |
Q |
| |
|
|| | |||||||||| |||| ||| |||||||||| ||| ||||| |||||||||||| | || |||||||||||||||||| ||||||||| |
|
|
| T |
34726602 |
cacgcagtggtaatacttatttttctctgattttgcagtttatctcagttcatgcttgttatctgattttgattgttaaagctgaaaaaacgaaatgtag |
34726503 |
T |
|
| Q |
212 |
aaatataagacca |
224 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
34726502 |
aaatctaagacca |
34726490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 34721574 - 34721459
Alignment:
| Q |
15 |
aagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttctt |
114 |
Q |
| |
|
||||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || | || ||| ||||||||||||||||||||||||||| | |
|
|
| T |
34721574 |
aagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctcgtaaaactgcccaatcaagtcaatcagctttgtcttcgt |
34721475 |
T |
|
| Q |
115 |
catcctgtggtaatac |
130 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
34721474 |
caccctgtggtaatac |
34721459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University