View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7139_high_17 (Length: 313)

Name: NF7139_high_17
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7139_high_17
NF7139_high_17
[»] chr3 (1 HSPs)
chr3 (1-299)||(34335673-34335971)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 34335673 - 34335971
Alignment:
Q  1 tagggtgcaacttctttctaacaatagcacaagatctaccatcaattagtttaataaaatcgttaactctgaaggcacctttaatgtaatgctcaatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335673 tagggtgcaacttctttctaacaatagcacaagatctaccatcaattagtttaataaaatcgttaactctgaaggcacctttaatgtaatgctcaatctt 34335772  T
Q  101 ttgatcattatcaccaaagacgttacaaagggcacctaagtaactccatggcaatttccctgttaccctcacagaatgtcccacggcacgaaaagcgtcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335773 ttgatcattatcaccaaagacgttacaaagggcacctaagtaactccatggcaatttccctgttaccctcacagaatgtcccacggcacgaaaagcgtcc 34335872  T
Q  201 ttacaaacaacgcgattcaaatcaaatttcgttcgatgtccaagtgccgcacgcggtgctggtggaggtggattcagtttcaaccttagacaatgttct 299  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34335873 ttacaaacaacgcgattcaaatcaaatttcgttccatgtccaagtgccgcacgcggtgctggtggaggtggattcagtttcaaccttaaacaatgttct 34335971  T

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