View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_high_2 (Length: 581)
Name: NF7139_high_2
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 566
Target Start/End: Original strand, 41154622 - 41155183
Alignment:
| Q |
16 |
agagaagaaattcactagaatcgaatttagagaccaaaaagaaactaaaacttgagaattttttggatattaaacgcaggatttgataactttgatgagt |
115 |
Q |
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| T |
41154622 |
agagaagaaattcactagaatcgaatttagagaccaaaaagaaactaaaacttgagaattttttggatattaaacgcaggatttgataactttgatgagt |
41154721 |
T |
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| Q |
116 |
cacaaa----------gtatatgtaaaagatgaaatactttccagcagaaaagttggcaatgttaatcaatactatgannnnnnn-ctctaatcctttgt |
204 |
Q |
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| T |
41154722 |
cacaaacaaaggtgaagtatatgtaaaagatgaaatactttccagcagaaaagttagcaatgttaatcaatactatgattttttttctctaatcctttgt |
41154821 |
T |
|
| Q |
205 |
tactaccaatcataataacactaacaaagggtgggaccagttcaaaattcattcacataaattctctattgagtcacgcggaagctcatataccacatgt |
304 |
Q |
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| T |
41154822 |
tactaccaatcataataacactaacaaagggtgggaccagttcaaaattcattcacataaattctctattgagtcacgcggaagctcatataccacatgt |
41154921 |
T |
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| Q |
305 |
tagttattctaatccaaattccaaatggttttgtttggaccttagagaaagattaaacatcttttaatgatagtgttattgattataatatcatcacaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41154922 |
tagttattctaatccaaattccaaatggttttgtttggaccttagagaaagattaaacatcttttaatgatagtgttattgattataatatcctcacaaa |
41155021 |
T |
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| Q |
405 |
accaaagatagggtaaaggagattccaaattctgtgttcccattgtcagagcacaattttataagtattaaggtgctcttggagtcttgagctttatacc |
504 |
Q |
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| T |
41155022 |
accaaagatagggtaaaggagattccaaattctgtgttcccattgtcagagcacaattttataagtattaaggtgctcttggagtcttgagctttataaa |
41155121 |
T |
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| Q |
505 |
acacgatcctaaataataataatgaggattttacatcactgccttcacaacctctgcttttt |
566 |
Q |
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| T |
41155122 |
acacgatcctaaataataataatgaggattttacatcactgccttcacaacctctgcttttt |
41155183 |
T |
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