View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_high_23 (Length: 250)
Name: NF7139_high_23
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7664546 - 7664782
Alignment:
| Q |
1 |
ttgattttgcagcaaatcttattttctggtttgttcttgacatgttcaagattatattagtttctttgtgccattcctttcttgttcatgtttttcatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7664546 |
ttgattttgcagcaaatcttattttctggtttgttcttgacatgttcaagattatattagtttctttgtgccattcatttcttgttcatgtttttcatca |
7664645 |
T |
|
| Q |
101 |
agtttggtgcatttgnnnnnnnatgaatcttcgtcattttcgggtttccaatcttgcaagttatcaagatttttgttatttcattaatcattctcaattt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664646 |
agtttggtgcatttgtttttttatgaatcttcgtcattttcgggtttccaatcttgcaagttatcaagatttttgttatttcattaatcattctcaattt |
7664745 |
T |
|
| Q |
201 |
gattgattgtacgttttcatcaacaatcttcgtatctctgc |
241 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
7664746 |
gattgatt----gttttcatcaacaatcttcgtatctctgc |
7664782 |
T |
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