View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7139_high_3 (Length: 516)

Name: NF7139_high_3
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7139_high_3
NF7139_high_3
[»] chr7 (10 HSPs)
chr7 (127-507)||(32096737-32097118)
chr7 (127-293)||(32093021-32093188)
chr7 (127-293)||(32089264-32089431)
chr7 (127-226)||(41706628-41706727)
chr7 (127-226)||(41812159-41812258)
chr7 (127-224)||(39128491-39128588)
chr7 (127-224)||(39478457-39478554)
chr7 (127-293)||(32087909-32088076)
chr7 (132-170)||(32089075-32089113)
chr7 (232-293)||(32095044-32095105)
[»] chr3 (8 HSPs)
chr3 (1-226)||(38044394-38044619)
chr3 (127-226)||(48837985-48838084)
chr3 (128-226)||(50152352-50152450)
chr3 (127-226)||(50903984-50904083)
chr3 (128-226)||(50916154-50916256)
chr3 (188-225)||(147941-147978)
chr3 (186-222)||(50823392-50823428)
chr3 (186-222)||(50852433-50852469)
[»] chr1 (7 HSPs)
chr1 (127-227)||(31141947-31142047)
chr1 (134-213)||(30272473-30272551)
chr1 (127-192)||(27402434-27402499)
chr1 (140-213)||(27981698-27981771)
chr1 (184-224)||(34470026-34470066)
chr1 (187-224)||(6760094-6760131)
chr1 (187-223)||(520521-520557)
[»] chr8 (5 HSPs)
chr8 (127-226)||(21634805-21634904)
chr8 (127-201)||(5515537-5515611)
chr8 (32-98)||(21634722-21634788)
chr8 (183-221)||(10583097-10583135)
chr8 (182-226)||(32735648-32735692)
[»] chr6 (5 HSPs)
chr6 (127-226)||(26217233-26217332)
chr6 (145-224)||(7618947-7619026)
chr6 (165-224)||(11187905-11187964)
chr6 (144-226)||(18871931-18872014)
chr6 (151-226)||(6845968-6846043)
[»] scaffold0856 (1 HSPs)
scaffold0856 (134-223)||(4895-4984)
[»] chr2 (3 HSPs)
chr2 (131-205)||(32271347-32271421)
chr2 (127-225)||(43741443-43741541)
chr2 (189-224)||(20940535-20940570)
[»] chr4 (5 HSPs)
chr4 (132-181)||(8762982-8763031)
chr4 (132-206)||(7777910-7777985)
chr4 (132-206)||(7772302-7772377)
chr4 (132-206)||(7792702-7792777)
chr4 (177-224)||(19260978-19261025)
[»] chr5 (4 HSPs)
chr5 (187-224)||(8058720-8058757)
chr5 (189-224)||(17013884-17013919)
chr5 (181-220)||(18352643-18352682)
chr5 (186-225)||(29176661-29176700)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 127 - 507
Target Start/End: Original strand, 32096737 - 32097118
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32096737 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 32096836  T
Q  227 tt-taatggttcgcttgtagtatataaacgccgagatactttctgtttcagtcgatgtgggactaaaacaagcaaatataacacaacatgcaagtccttc 325  Q
       | |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32096837 acattatggttcgcttgcagtatataaacgcctagatattttctgtttcagtcgatgtgggactaaaacaagcaaatataacacaacatgcaagtccttc 32096936  T
Q  326 tccttcacttatataacacaacatgcatcttccttctcctttatttcatttttgatttcagttcctgcgcatataagtagctacctctagtgtagccttt 425  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32096937 tccttcacttatataacacaacatgcatcttccttcttctttattttatttttgatttcagttcctgcgcatataagtagctacctctagtgtagccttt 32097036  T
Q  426 tatcgatactcttccagacttttcatagcatgtcacgtcaattcatttctaatagtactattttactactttatactctctg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32097037 tatcgatactcttccagacttttcatagcatgtcacgtcaattcatttctaatagtactattttactactttatactctctg 32097118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 32093021 - 32093188
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32093021 tttggaccatttctcgatttgtgcgtgtcatccttgcacaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 32093120  T
Q  227 -tttaatggttcgcttgtagtatataaacgccgagatactttctgtttcagtcgatgtgggactaaaa 293  Q
       || ||||||||||| ||||| ||||||| || ||| |||||||||||| ||||||||||||||||    
T  32093121 gcctactggttcgcttgaagtatttaaacgctgaaatattttctgtttcagacgatgtgggactaaaa 32093188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 32089264 - 32089431
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089264 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 32089363  T
Q  227 -tttaatggttcgcttgtagtatataaacgccgagatactttctgtttcagtcgatgtgggactaaaa 293  Q
       | |||||| |||||   |||||| ||||| | ||| ||||| |||||||||||||||||||||||    
T  32089364 gccttatggtttgcttgctctatatatacgccaaaatattttctatttcagtcgatgtgggactaaaa 32089431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 41706628 - 41706727
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706628 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 41706727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 41812258 - 41812159
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41812258 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 41812159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 39128491 - 39128588
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39128491 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 39128588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 39478554 - 39478457
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39478554 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 39478457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 32087909 - 32088076
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32087909 tttggaccatttctcgatttgtgcgtgtcatccttgtgcaggggccatgttaatcttctctgtatcgttccaattttatcagatgtccccgaagggacaa 32088008  T
Q  227 -tttaatggttcgcttgtagtatataaacgccgagatactttctgtttcagtcgatgtgggactaaaa 293  Q
       | | ||||||||||   |||||||| ||  | ||| |||||||||||| ||||||||||||||||    
T  32088009 gccttacggttcgcttgctctatataaatgctaaaatattttctgtttcagccgatgtgggactaaaa 32088076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 32089113 - 32089075
Alignment:
Q  132 accatttctcgatttgtgcgtgtcatccttgcgcagggg 170  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32089113 accatttctcgatttgtgcgtgtcatccttgcgcagggg 32089075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 32095044 - 32095105
Alignment:
Q  232 tggttcgcttgtagtatataaacgccgagatactttctgtttcagtcgatgtgggactaaaa 293  Q
    ||||||||||| ||||||||| ||  |||||| ||| ||| |||||||||||| ||||||||    
T  32095044 tggttcgcttgcagtatataatcgttgagatattttttgtgtcagtcgatgtgtgactaaaa 32095105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38044394 - 38044619
Alignment:
Q  1 aaccctaaacacaaaaatctaagtgaagaggaacggaattgaaaacgaaatgcagaagagaaatcatacctgaacggagaaaacttacgagtgtgaaatt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38044394 aaccctaaacacaaaaatctaagtgaaaaggaacggaattgaaaaccaaatgcagaaaagaaatcatacctgaacggagaaaacttacgagtgtgaaatt 38044493  T
Q  101 gaagggnnnnnnnnnnnnnnnnnnnntttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 200  Q
    |||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38044494 gaaggaaaaaaaaagtcaaaaaaaaatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 38044593  T
Q  201 tttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||    
T  38044594 tttatcggatgtccccgaagggacaa 38044619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 48838084 - 48837985
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48838084 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 48837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 50152450 - 50152352
Alignment:
Q  128 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  50152450 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcagatgtccccaaagggacaa 50152352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 50904083 - 50903984
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50904083 tttgaaccatttctcgaattgtgcgtgtcatccttgcgcaggggccttgctaatcttctctgtatcgttccaattttatcggatgtccccgaagtgacaa 50903984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 50916154 - 50916256
Alignment:
Q  128 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccat----gctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 223  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||    || |||||||||| |||||||||||||||||||||||| ||| ||||||    
T  50916154 ttggaccatttctcaatttgtgcgtgtcatccttgtgcaagggccatccatgccaatcttctctatatcgttccaattttatcggatgttcccaaaggga 50916253  T
Q  224 caa 226  Q
    |||    
T  50916254 caa 50916256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 147978 - 147941
Alignment:
Q  188 gtatcgttccaattttatcggatgtccccgaagggaca 225  Q
    ||||||||||||||||||||||||||||||||||||||    
T  147978 gtatcgttccaattttatcggatgtccccgaagggaca 147941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 50823428 - 50823392
Alignment:
Q  186 ctgtatcgttccaattttatcggatgtccccgaaggg 222  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50823428 ctgtatcgttccaattttatcggatgtccctgaaggg 50823392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 50852433 - 50852469
Alignment:
Q  186 ctgtatcgttccaattttatcggatgtccccgaaggg 222  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50852433 ctgtatcgttccaattttatcggatgtccctgaaggg 50852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 31141947 - 31142047
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31141947 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 31142046  T
Q  227 t 227  Q
    |    
T  31142047 t 31142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 30272551 - 30272473
Alignment:
Q  134 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtc 213  Q
    ||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  30272551 catttctcgatttgtgcgtgtcattgttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtc 30272473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 27402434 - 27402499
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatc 192  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  27402434 tttggaccatttctcgatttgtgcgtgtcatccttgtgcaggggccatgctaattttttctgtatc 27402499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 27981771 - 27981698
Alignment:
Q  140 tcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtc 213  Q
    ||||||||||| ||||||||||||  ||||  |||||| ||||||||| ||| ||| |||||||||||||||||    
T  27981771 tcgatttgtgcatgtcatccttgcatagggctcatgctgatcttctctatattgtttcaattttatcggatgtc 27981698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 34470066 - 34470026
Alignment:
Q  184 ctctgtatcgttccaattttatcggatgtccccgaagggac 224  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  34470066 ctctgtatcattccaattttatcggatgtccccgaagggac 34470026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 6760131 - 6760094
Alignment:
Q  187 tgtatcgttccaattttatcggatgtccccgaagggac 224  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  6760131 tgtatcgttccaattttatcggatgtccctgaagggac 6760094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 520521 - 520557
Alignment:
Q  187 tgtatcgttccaattttatcggatgtccccgaaggga 223  Q
    |||||||||||||||||||||||||| || |||||||    
T  520521 tgtatcgttccaattttatcggatgttccggaaggga 520557  T

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Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 21634805 - 21634904
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21634805 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 21634904  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 5515611 - 5515537
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaatt 201  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  5515611 tttggaccatttctcgatttgtgcgtgtcatctttgcgcaagggccatgctaatcttctctgtatcgttccaatt 5515537  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 21634722 - 21634788
Alignment:
Q  32 aacggaattgaaaacgaaatgcagaagagaaatcatacctgaacggagaaaacttacgagtgtgaaa 98  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  21634722 aacggaattgaaaacaaaatgcagaaaagaaatcatacctgaaccgagaaaacttacgcgtgtgaaa 21634788  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 10583097 - 10583135
Alignment:
Q  183 tctctgtatcgttccaattttatcggatgtccccgaagg 221  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  10583097 tctctgtatcgtttcaattttatcggatgtccccgaagg 10583135  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 32735692 - 32735648
Alignment:
Q  182 ttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  32735692 ttctctgtatcgttccaattttatgggatgtcctcgaatggacaa 32735648  T

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Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 26217233 - 26217332
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26217233 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 26217332  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 7618947 - 7619026
Alignment:
Q  145 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 224  Q
    |||||||||||||| ||||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7618947 ttgtgcgtgtcatctttgcgcatggatcatgctaatcttctctgtatcattccaattttatcggatgtccccgaagggac 7619026  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 11187964 - 11187905
Alignment:
Q  165 caggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 224  Q
    |||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||    
T  11187964 caggggccatgctaatcttctctgtatcgttccaatttttccggacgtcctcgaagggac 11187905  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 18871931 - 18872014
Alignment:
Q  144 tttgtgcgtgtcatccttgcgca-ggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||||| || ||| |||||| ||||||||| | |||||||    
T  18871931 tttgtgcgtgtcatctttgcgcaaggggccatgctaatcttgtctgtatcatttcaactttatcagatgtccccaatgggacaa 18872014  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 6846043 - 6845968
Alignment:
Q  151 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 226  Q
    |||| ||||||||||||||| | || ||||||||| | ||||||||||||||||||||| ||| || |||| ||||    
T  6846043 gtgtgatccttgcgcaggggtcctgttaatcttctttatatcgttccaattttatcggaagtctccaaaggaacaa 6845968  T

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Target: scaffold0856 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 4895 - 4984
Alignment:
Q  134 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 223  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  4895 catttctcgatttgtgcgtgtcatccttgcgcatgggccatgctgatcttctctgtatcattccaattttatcgaatgtccccgaaggga 4984  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 32271347 - 32271421
Alignment:
Q  131 gaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  32271347 gaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgataatcttctttgtatcgttccaattttat 32271421  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 43741541 - 43741443
Alignment:
Q  127 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggaca 225  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||| ||||||||| ||||| |||  |||||||||||||||||| |||||||||    
T  43741541 tttggaccatttctcgattggtgcgtgtcatccttgtgcaggagccatgttaatcttctatgtattgttttaattttatcggatgtccctgaagggaca 43741443  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 20940570 - 20940535
Alignment:
Q  189 tatcgttccaattttatcggatgtccccgaagggac 224  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20940570 tatcgtttcaattttatcggatgtccccgaagggac 20940535  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 8763031 - 8762982
Alignment:
Q  132 accatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8763031 accatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatc 8762982  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 7777910 - 7777985
Alignment:
Q  132 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 206  Q
    ||||||||||||||| ||| || ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  7777910 accatttctcgatttatgcttgccatccttacgccgggtgccatgctaatcttctctgtatcgttccaattttatc 7777985  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 7772302 - 7772377
Alignment:
Q  132 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 206  Q
    |||||||| |||| | ||| || ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  7772302 accatttcacgatgtatgcttgccatccttacgccgggtgccatgctaatcttctctgtatcgttccaattttatc 7772377  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 7792702 - 7792777
Alignment:
Q  132 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 206  Q
    ||||||||||||||| ||| || ||||||| ||  ||| |||||||||||||||||| ||||||||||||||||||    
T  7792702 accatttctcgatttatgcttgccatccttacgtcgggtgccatgctaatcttctctatatcgttccaattttatc 7792777  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 19261025 - 19260978
Alignment:
Q  177 taatcttctctgtatcgttccaattttatcggatgtccccgaagggac 224  Q
    ||||||| |||||||||||||||||| ||||| | |||||||||||||    
T  19261025 taatcttttctgtatcgttccaatttaatcgggtttccccgaagggac 19260978  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 8058757 - 8058720
Alignment:
Q  187 tgtatcgttccaattttatcggatgtccccgaagggac 224  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8058757 tgtatcgctccaattttatcggatgtccccgaagggac 8058720  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 17013919 - 17013884
Alignment:
Q  189 tatcgttccaattttatcggatgtccccgaagggac 224  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17013919 tatcgttccaattttatcggatgtccctgaagggac 17013884  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 18352682 - 18352643
Alignment:
Q  181 cttctctgtatcgttccaattttatcggatgtccccgaag 220  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  18352682 cttctctgtatcattccaattttatcggatgttcccgaag 18352643  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 29176661 - 29176700
Alignment:
Q  186 ctgtatcgttccaattttatcggatgtccccgaagggaca 225  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  29176661 ctgtatcgttccaattttatcggatgttctcgaagggaca 29176700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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