View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7139_high_30 (Length: 218)

Name: NF7139_high_30
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7139_high_30
NF7139_high_30
[»] chr4 (7 HSPs)
chr4 (1-200)||(38214764-38214963)
chr4 (1-200)||(38227187-38227386)
chr4 (1-200)||(38248802-38249001)
chr4 (9-188)||(38238724-38238903)
chr4 (1-194)||(38243654-38243847)
chr4 (1-200)||(38253917-38254116)
chr4 (8-152)||(38220813-38220957)
[»] chr6 (2 HSPs)
chr6 (1-194)||(17455417-17455610)
chr6 (1-160)||(17434317-17434476)
[»] chr2 (2 HSPs)
chr2 (16-152)||(11485202-11485338)
chr2 (16-152)||(11478931-11479067)
[»] chr1 (1 HSPs)
chr1 (15-152)||(21546636-21546773)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38214764 - 38214963
Alignment:
Q  1 tcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaag 100  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  38214764 tcctctgcgccgcgcgtatcgatggcatgaacattaaccaaccatttctcctcaaacccttctggaatctcttcaggattacctatctctataccaaaag 38214863  T
Q  101 gatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaac 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214864 gatccggaatatctgttgctgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaac 38214963  T

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Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38227187 - 38227386
Alignment:
Q  1 tcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38227187 tcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaacccttgtggaatctcttcaggattacctatctctataccgaaag 38227286  T
Q  101 gatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaac 200  Q
    |||| |||||||||||||| |||||||||||||| || ||||| |||||||| |||| |||  ||||| | || |||||||||||||| || ||||||||    
T  38227287 gatctggaatatctgttgtcgttcctcgtgtttctgacccaagtccaaagtattgtgaaatagcatttccctggcatatgccactgttccttacaagaac 38227386  T

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Target: chr4; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38248802 - 38249001
Alignment:
Q  1 tcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaag 100  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||| |||||||||| ||||    
T  38248802 tcctctgtgccacgcgtatcgatggcatgaacattaagcaaccatttctcctcaaacccttctggaatctcttcaggactacctgtctctataccaaaag 38248901  T
Q  101 gatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaac 200  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||  |||| | || |||||||||||||| || ||||||||    
T  38248902 gatctggaatatctgttgtcgttcctcgtgtttctgatccaaggccaaagtattgtggaatggtatttccctggcatatgccactgttccttacaagaac 38249001  T

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Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 38238724 - 38238903
Alignment:
Q  9 gcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccgga 108  Q
    |||||||||||| |||||||||||||||||||||||||| || | |||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  38238724 gcctcgcgtatcgatggcatgaacattaagcaaccatttttcgtgaaacccttctggaatctcttcaggattgcctatctctataccgaaaggatccgga 38238823  T
Q  109 atatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtt 188  Q
    ||||| || |  ||||| |||||||||||||||||||||||||| |||  ||    |||| |||||||||||||||||||    
T  38238824 atatcggtcgccgttccacgtgtttcggatccaaggccaaagtattgtccaagagtatttccttgacatatgccactgtt 38238903  T

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Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 38243654 - 38243847
Alignment:
Q  1 tcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaag 100  Q
    |||||| |||| || ||||||||||||||||||||||||| ||||||||||||  |||||  || || |||| |||||||||||||||||||||| ||||    
T  38243654 tcctctacgccacgtgtatcaatggcatgaacattaagcacccatttatcctcggacccttctgaaacctctgcaggattacctatctctataccaaaag 38243753  T
Q  101 gatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcac 194  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||  ||    |||| | ||||||||||||||||| |||||    
T  38243754 gatccggaatatctgttgctgttcctcgtgtttcggatccaatgccaaagtattgtccaagagtatttccctgacatatgccactgttcctcac 38243847  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38253917 - 38254116
Alignment:
Q  1 tcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaag 100  Q
    |||||||| ||||| ||||| |||||||||||||||| || |||||| || |||||||||  ||||| |||| |||||||||||| ||||||||| ||||    
T  38253917 tcctctgcacctcgtgtatcgatggcatgaacattaaccatccatttctcatcaaacccttctggaacctctgcaggattacctacctctataccaaaag 38254016  T
Q  101 gatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaac 200  Q
    | ||||||||||||||   |||||||| |||||||||||||||||||||||| |||  ||    |||| | || ||||||||||||||||||||||||||    
T  38254017 ggtccggaatatctgtcagtgttcctcttgtttcggatccaaggccaaagtattgtccaagataatttccctggcatatgccactgtttctcacaagaac 38254116  T

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Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 38220813 - 38220957
Alignment:
Q  8 cgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccgg 107  Q
    |||| |||||||||||||||||||| || |||| |||| | |||||| |||||  |||||||||| |||||||||||||||||||||| |||||||||||    
T  38220813 cgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgg 38220912  T
Q  108 aatatctgttgttgttcctcgtgtttcggatccaaggccaaagta 152  Q
    |||||| || |  || ||||||||||| |||||||| ||||||||    
T  38220913 aatatcagtcgccgtccctcgtgtttcagatccaagcccaaagta 38220957  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 17455417 - 17455610
Alignment:
Q  1 tcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaag 100  Q
    |||||| |||| || ||||| |||||||||| ||||| ||||||||| ||||||||||||  |||||| |||   |||||||| ||||| ||||| ||||    
T  17455417 tcctctacgccacgtgtatcgatggcatgaatattaaacaaccatttctcctcaaacccttctggaatttctgttggattacccatctccataccaaaag 17455516  T
Q  101 gatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcac 194  Q
    ||||||||||||| || | ||||||||||||||| ||||||||||| || ||||||||||  | |||| |||| || ||||||||||| |||||    
T  17455517 gatccggaatatcggtcggtgttcctcgtgtttctgatccaaggccgaaatactgtggaagaatatttccttggcaaatgccactgttcctcac 17455610  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 17434317 - 17434476
Alignment:
Q  1 tcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaag 100  Q
    |||||| |||| || ||||| |||||||||| ||||| |||||| || ||||||||||||  |||||| ||| |||||||||||||||||||||| ||||    
T  17434317 tcctctacgccacgtgtatcgatggcatgaatattaaacaaccacttctcctcaaacccttctggaatatctgcaggattacctatctctataccaaaag 17434416  T
Q  101 gatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaa 160  Q
    |||| ||||| || || |  |||||||||||||||||||||||||| || ||||||||||    
T  17434417 gatctggaatgtcagtcggcgttcctcgtgtttcggatccaaggccgaaatactgtggaa 17434476  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 11485338 - 11485202
Alignment:
Q  16 gtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctg 115  Q
    |||||||| |||||||||||||  |||||||| ||| || |||||  |||||| |||||||||||||| |  ||||| ||  |||| || ||||||| ||    
T  11485338 gtatcaatagcatgaacattaataaaccatttttccacatacccttttggaatttcttcaggattaccaacttctatgccataagggtcaggaatatatg 11485239  T
Q  116 ttgttgttcctcgtgtttcggatccaaggccaaagta 152  Q
    |  |||| |||| |||||| |||||||| ||| ||||    
T  11485238 tatttgtgcctcttgtttcagatccaagaccatagta 11485202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 11479067 - 11478931
Alignment:
Q  16 gtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctg 115  Q
    |||||||| ||||||||||||| ||||||||| ||| || |||||  |||||| |||||| ||||||| |  ||||| ||  |||| |  ||||||| ||    
T  11479067 gtatcaatagcatgaacattaatcaaccatttttccacatacccttttggaatttcttcatgattaccaacttctattccataaggttgaggaatatatg 11478968  T
Q  116 ttgttgttcctcgtgtttcggatccaaggccaaagta 152  Q
    |  |||| |||| |||||| |||||||| ||| ||||    
T  11478967 tatttgtgcctcttgtttcagatccaagaccatagta 11478931  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 21546773 - 21546636
Alignment:
Q  15 cgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatct 114  Q
    ||||||||| ||||||||||| | ||||||||| ||| || |||||  |||||| ||  |||||||||| |  ||||||||  |||| || ||||||| |    
T  21546773 cgtatcaattgcatgaacattgatcaaccatttctccacatacccttttggaatttcagcaggattaccaacttctataccataagggtctggaatatat 21546674  T
Q  115 gttgttgttcctcgtgtttcggatccaaggccaaagta 152  Q
    ||  |||| | || |||||| |||||||| ||| ||||    
T  21546673 gtatttgtgcttcttgtttctgatccaagaccatagta 21546636  T

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