View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_high_4 (Length: 492)
Name: NF7139_high_4
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 7664567 - 7664093
Alignment:
| Q |
1 |
ataagatttgctgcaaaatcaatgaagggggtgagagtgagccgcaatagaaaaagtaactaaagaaaggttaggggagaaaatttgataccatgttatg |
100 |
Q |
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| T |
7664567 |
ataagatttgctgcaaaatcaatgaagggggtgagagtgagccgcaatagaaaaagtaactaaagaaaggttaggggagaaaatttgataccatattatg |
7664468 |
T |
|
| Q |
101 |
aaggaacaaattgaacgaaagtgaattcttttcattaatgaaattagtgtttataacacatatttatatacaaatgatatattcacactaactaaggtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664467 |
aaggaacaaattgaacgaaagtgaattcttttcattaatgaaattagtgtttataacacatatttatatacaaatgatatattcacactaactaaggtgt |
7664368 |
T |
|
| Q |
201 |
actagctaggattggatacaaagaattagtagtgatgtgatatagcttaagctgcaagtaactatgtgtatctaaataattaggagtagacctatttatg |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664367 |
actagctaggattggatacaaaaaattagtagtgatgtgatatagcttaagctgcaagtaactatgtgtatctaaataattaggagtagacctatttatg |
7664268 |
T |
|
| Q |
301 |
taatacttcgaaatctaaccaatgctgacttaatctaatctaattagagttaagctaactagttaattagagtacgttttttcgataataatagttaatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7664267 |
taatacttcgaaatctaaccaatgctgacttaatctaatctaattagagttaagctaactagttaattagagtacgttttttcaataataatagttaatt |
7664168 |
T |
|
| Q |
401 |
agagtctgttattcagttgtctttatatatatttactcttttatgttgtggtgagtcactgagttgacttatatat |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
7664167 |
agagtctgttattcagttgtctttatatatatttactc-tttatgttgtggtgactcactgagttgacttatatat |
7664093 |
T |
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