View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7139_high_7 (Length: 409)

Name: NF7139_high_7
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7139_high_7
NF7139_high_7
[»] chr8 (12 HSPs)
chr8 (1-394)||(10367647-10368033)
chr8 (326-389)||(11795104-11795167)
chr8 (79-138)||(44141188-44141247)
chr8 (1-59)||(44141097-44141155)
chr8 (2-59)||(32927872-32927929)
chr8 (1-41)||(26100193-26100233)
chr8 (101-144)||(16972216-16972259)
chr8 (1-59)||(37684385-37684443)
chr8 (79-140)||(15677929-15677990)
chr8 (77-142)||(26668443-26668508)
chr8 (81-142)||(32681378-32681439)
chr8 (80-141)||(40769500-40769561)
[»] scaffold0168 (1 HSPs)
scaffold0168 (2-141)||(31718-31863)
[»] chr2 (4 HSPs)
chr2 (1-142)||(30503100-30503247)
chr2 (79-144)||(33047683-33047748)
chr2 (1-48)||(42740968-42741015)
chr2 (81-145)||(42774968-42775032)
[»] chr3 (2 HSPs)
chr3 (78-140)||(25359703-25359765)
chr3 (81-141)||(52363957-52364017)
[»] chr5 (5 HSPs)
chr5 (1-62)||(9818711-9818772)
chr5 (81-140)||(38845644-38845703)
chr5 (83-140)||(18851217-18851274)
chr5 (290-326)||(6587171-6587207)
chr5 (1-41)||(6951352-6951392)
[»] chr4 (15 HSPs)
chr4 (79-144)||(21691351-21691416)
chr4 (80-141)||(54705523-54705584)
chr4 (77-144)||(29904121-29904188)
chr4 (80-142)||(48045833-48045896)
chr4 (79-142)||(49138966-49139029)
chr4 (79-138)||(50061766-50061825)
chr4 (1-59)||(32818417-32818475)
chr4 (1-59)||(50061675-50061733)
chr4 (81-134)||(35064962-35065015)
chr4 (81-144)||(2326944-2327007)
chr4 (2-69)||(26617438-26617505)
chr4 (74-141)||(33843583-33843650)
chr4 (4-57)||(11271587-11271641)
chr4 (98-142)||(43868027-43868071)
chr4 (1-61)||(49138810-49138869)
[»] chr1 (9 HSPs)
chr1 (81-142)||(14644588-14644649)
chr1 (81-140)||(15084726-15084785)
chr1 (79-144)||(45660880-45660944)
chr1 (2-41)||(28287384-28287423)
chr1 (1-59)||(6021784-6021842)
chr1 (1-35)||(11049254-11049288)
chr1 (101-150)||(31362354-31362403)
chr1 (81-138)||(36780250-36780307)
chr1 (1-41)||(28083935-28083975)
[»] chr6 (6 HSPs)
chr6 (2-61)||(16540085-16540144)
chr6 (1-59)||(5724677-5724735)
chr6 (79-141)||(5724761-5724823)
chr6 (1-59)||(4910888-4910946)
chr6 (1-54)||(7952756-7952809)
chr6 (1-41)||(765433-765473)
[»] chr7 (4 HSPs)
chr7 (1-59)||(41386862-41386920)
chr7 (77-139)||(40491472-40491534)
chr7 (4-61)||(15903580-15903637)
chr7 (1-41)||(17111855-17111895)
[»] scaffold0314 (1 HSPs)
scaffold0314 (81-137)||(17322-17378)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 10368033 - 10367647
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatttttctcgataatcaattttagaatcaattctatatctccat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10368033 gaatcaaaagctgcaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaattcttctcgataatcaattttagaatcaattctatatctccat 10367934  T
Q  101 aatcaattttggcccctctagaagtagaaccaaacatacactaaccatgtgtttggttgtgcgtttagcaacatcgatcctgcgtttcagtcccttttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10367933 aatcaattttggcccctctagaagtagaaccaaacatacactaaccatgtgtttggttgtgcgtttagcaacatcgatcctgcgtttcagtcccttttgg 10367834  T
Q  201 ccatgaaaacaataagctaagaatagtagcttcacnnnnnnnttccattgactacctcctagaggctagaggtggaaacagacatatgctaaataaacta 300  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||| ||||       ||||||||||||||| |||||||||||||||||||    
T  10367833 ccatgaaaacaataagctaagaatagtagcttcacaaaaaatttccattgactgcctc-------ctagaggtggaaacaaacatatgctaaataaacta 10367741  T
Q  301 caattgttttcatataagctataagtcataagctattatggagagctcattcaaacaagctgaaaactggttttagacatgtcataagctcttt 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10367740 caattgttttcatataagctataagtcataagctattatggagagctcattcaaacaagctgaaaactggttttagacatgtcataagctcttt 10367647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 11795104 - 11795167
Alignment:
Q  326 tcataagctattatggagagctcattcaaacaagctgaaaactggttttagacatgtcataagc 389  Q
    |||||||||||||||||||||| ||  ||| ||||||||||| |||| | ||||||||||||||    
T  11795104 tcataagctattatggagagcttatggaaataagctgaaaacaggttatggacatgtcataagc 11795167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 44141188 - 44141247
Alignment:
Q  79 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacata 138  Q
    ||||||||||||| | ||||| ||||||||||||  ||||||||||| ||||||||||||    
T  44141188 agaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaacata 44141247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 44141097 - 44141155
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    ||||||||| |||||||||||| | |||||||||| ||||| ||||||| |||||||||    
T  44141097 gaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaatt 44141155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 32927929 - 32927872
Alignment:
Q  2 aatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    ||||||||||||||||||||||| |||||||||| ||| | | ||||| |||||||||    
T  32927929 aatcaaaagctacaaatcctagcttcaagtagaatcaactattgaggcaaaatcaatt 32927872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26100193 - 26100233
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaatt 41  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  26100193 gaatcaaaagctacaaatcctagcttcaaatagaaccaatt 26100233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 16972216 - 16972259
Alignment:
Q  101 aatcaattttggcccctctagaagtagaaccaaacatacactaa 144  Q
    |||||| ||||||| || ||||||||||||||||||||||||||    
T  16972216 aatcaaatttggcctctttagaagtagaaccaaacatacactaa 16972259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37684443 - 37684385
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    ||||||||||| |||||||||| | |||||||||| ||||| ||||| | |||||||||    
T  37684443 gaatcaaaagccacaaatcctaacttcaagtagaatcaattctggagacaaaatcaatt 37684385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 15677929 - 15677990
Alignment:
Q  79 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacataca 140  Q
    |||||||||| || | ||||| ||||||||||  ||||| ||||||| ||||||||||||||    
T  15677929 agaatcaattgtacaactccacaatcaattttaacccctgtagaagtggaaccaaacataca 15677990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 26668508 - 26668443
Alignment:
Q  77 ttagaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacact 142  Q
    ||||||||||||||| ||||||| ||| |||   ||||||||||||||| ||||| || |||||||    
T  26668508 ttagaatcaattctacatctccagaattaataacggcccctctagaagttgaaccgaaaatacact 26668443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 32681378 - 32681439
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacact 142  Q
    ||||||||||| | |||||||||||||| || || || || ||||| |||||||||||||||    
T  32681378 aatcaattctacaactccataatcaattctgacctctttataagtaaaaccaaacatacact 32681439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 40769500 - 40769561
Alignment:
Q  80 gaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacac 141  Q
    |||| |||| |||| ||||||||||||||||| |  ||||| ||||| ||||||||||||||    
T  40769500 gaattaattttataactccataatcaattttgacaactctaaaagtataaccaaacatacac 40769561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 31863 - 31718
Alignment:
Q  2 aatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatttttctcgataatca------attttagaatcaattctatatc 95  Q
    ||||||||||||||||||||||| ||||||| || ||||| |||||||  |||||||||| ||||| ||  |      || | ||||||||||||| | |    
T  31863 aatcaaaagctacaaatcctagcttcaagtataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacc 31764  T
Q  96 tccataatcaattttggcccctctagaagtagaaccaaacatacac 141  Q
    || | |||||||||||| | |||||||||| |||||||||||||||    
T  31763 tctagaatcaattttggtcactctagaagtggaaccaaacatacac 31718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 30503247 - 30503100
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatttttctcgataatcaatt-------ttagaatcaattctata 93  Q
    |||||||||||||| |||||| || |||||||||| ||||| ||||||| |||||| || |||| || |||||||        ||||||||||||||| |    
T  30503247 gaatcaaaagctacgaatcctggcttcaagtagaatcaattttggaggcaaaatcatttcttcttga-aatcaatcgaacatgttagaatcaattctaca 30503149  T
Q  94 tctccataatcaattttggcccctctagaagtagaaccaaacatacact 142  Q
      |||| ||||||||||| ||||| ||||||| ||||||| ||||||||    
T  30503148 cttccaaaatcaattttgacccctttagaagtggaaccaagcatacact 30503100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 33047683 - 33047748
Alignment:
Q  79 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacactaa 144  Q
    ||||||||||||| | ||||| |||||||||||| |||||||||||   ||||||||||| |||||    
T  33047683 agaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaacataaactaa 33047748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42741015 - 42740968
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggagg 48  Q
    ||||||||||||||||||| |||| |||||||||| ||||| ||||||    
T  42741015 gaatcaaaagctacaaatcttagcttcaagtagaatcaattatggagg 42740968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 42774968 - 42775032
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacactaac 145  Q
    ||||||||||||| ||| | |||||||||||||  | ||||||||  ||||| ||||||||||||    
T  42774968 aatcaattctatacctctagaatcaattttggctaccctagaagttaaaccacacatacactaac 42775032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 25359703 - 25359765
Alignment:
Q  78 tagaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacataca 140  Q
    ||||| |||||||||| |||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  25359703 tagaagcaattctatacctccataatcaattctggccactctaaaagtggaaccaaacataca 25359765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 52364017 - 52363957
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacac 141  Q
    |||||||| || | ||| |||||||||||||| ||||||| |||| |||||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaacatacac 52363957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9818772 - 9818711
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaattttt 62  Q
    ||||||||||||||||||| |||| |||||||||| ||||| ||||||| |||||| |||||    
T  9818772 gaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcatttttt 9818711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 38845644 - 38845703
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacataca 140  Q
    ||||||||||| | ||||| |||||||||||| | |||||||||| ||||||||||||||    
T  38845644 aatcaattctacacctccagaatcaattttggtctctctagaagtggaaccaaacataca 38845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 18851217 - 18851274
Alignment:
Q  83 tcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacataca 140  Q
    ||||||||| | |||||||||||||||||| |||||||||||  ||| ||||||||||    
T  18851217 tcaattctacaactccataatcaattttggtccctctagaagcggaatcaaacataca 18851274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 6587207 - 6587171
Alignment:
Q  290 taaataaactacaattgttttcatataagctataagt 326  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  6587207 taaataaacttcaattgttttcgtataagctataagt 6587171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6951352 - 6951392
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaatt 41  Q
    |||||||||||||||||||||| | |||||||||| |||||    
T  6951352 gaatcaaaagctacaaatcctaacttcaagtagaatcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 21691351 - 21691416
Alignment:
Q  79 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacactaa 144  Q
    ||||||||||||| | ||||| |||||||| ||| |||||||||||| ||||||||||| ||||||    
T  21691351 agaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaacatgcactaa 21691416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 54705523 - 54705584
Alignment:
Q  80 gaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacac 141  Q
    ||||||||| |||| || ||||  |||||||||||||||||||||| |||||||||||||||    
T  54705523 gaatcaattatataccttcatagccaattttggcccctctagaagtggaaccaaacatacac 54705584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 29904188 - 29904121
Alignment:
Q  77 ttagaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacactaa 144  Q
    |||||||||||| |||||||| | |||||||| |||  |||||||||||  |||||||||||||||||    
T  29904188 ttagaatcaattttatatctctagaatcaattgtggatcctctagaagtgaaaccaaacatacactaa 29904121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 48045833 - 48045896
Alignment:
Q  80 gaatcaattctatatctccataatcaattttggcccc-tctagaagtagaaccaaacatacact 142  Q
    ||||||||||||  |||| | |||||||||||||||| ||||||||| ||||||||||||||||    
T  48045833 gaatcaattctacttctctagaatcaattttggccccctctagaagtggaaccaaacatacact 48045896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 49138966 - 49139029
Alignment:
Q  79 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacact 142  Q
    ||||||||||||| | ||| | |||||||||||||| || ||||||| ||||||||||||||||    
T  49138966 agaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaacatacact 49139029  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 50061766 - 50061825
Alignment:
Q  79 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacata 138  Q
    ||||||||||||| | ||||| ||||||||||||  ||||||||||| ||||||||||||    
T  50061766 agaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaacata 50061825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32818417 - 32818475
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    |||||||||||||||||| ||||| |||| ||||| ||||| ||||||| |||||||||    
T  32818417 gaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaatt 32818475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 50061675 - 50061733
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    ||||||||| |||||||||||| | |||||||||| ||||| ||||||| |||||||||    
T  50061675 gaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaatt 50061733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 35065015 - 35064962
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaa 134  Q
    ||||||||||| | ||||||||||||||||| |||||| |||||| ||||||||    
T  35065015 aatcaattctacacctccataatcaattttgacccctcgagaagtggaaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 2326944 - 2327007
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacactaa 144  Q
    ||||||||||||| ||||||||| |||| ||| ||| ||| ||||  |||||||||||||||||    
T  2326944 aatcaattctatacctccataattaattatggtcccactaaaagtgaaaccaaacatacactaa 2327007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 26617505 - 26617438
Alignment:
Q  2 aatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatttttctcgata 69  Q
    |||||||||||||| || ||||| |||||||||| || || ||||||| ||||||||| | |||||||    
T  26617505 aatcaaaagctacagattctagcttcaagtagaatcatttttggaggcaaaatcaattctactcgata 26617438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 33843650 - 33843583
Alignment:
Q  74 attttagaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacac 141  Q
    |||| ||||| ||||||| | ||| | |||||||||||| ||||||||||||  ||||||||||||||    
T  33843650 atttcagaattaattctacacctctagaatcaattttggaccctctagaagtgaaaccaaacatacac 33843583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 11271587 - 11271641
Alignment:
Q  4 tcaaaagctacaaatcctagcctcaag-tagaaccaattgtggaggcgaaatcaa 57  Q
    ||||||||||||||||||||| ||||| ||||| ||||| ||||||| |||||||    
T  11271587 tcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatcaa 11271641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 43868071 - 43868027
Alignment:
Q  98 cataatcaattttggcccctctagaagtagaaccaaacatacact 142  Q
    ||||||||||||| ||| ||||| ||||||| |||||||||||||    
T  43868071 cataatcaattttagccactctaaaagtagagccaaacatacact 43868027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 49138810 - 49138869
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatttt 61  Q
    |||||||||| ||||||||||||| ||||||||||  || | ||||||| |||||||||||    
T  49138810 gaatcaaaagttacaaatcctagcttcaagtagaa-taagtttggaggcaaaatcaatttt 49138869  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 14644649 - 14644588
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacact 142  Q
    |||||||| || ||||||||||||||||||| ||||| || |||| ||||||||||||||||    
T  14644649 aatcaattttacatctccataatcaattttgtcccctttaaaagttgaaccaaacatacact 14644588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 15084726 - 15084785
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacataca 140  Q
    ||||||||||| | || || ||||||| ||| ||||||||||||||||||||||||||||    
T  15084726 aatcaattctacaccttcagaatcaatattgacccctctagaagtagaaccaaacataca 15084785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 45660880 - 45660944
Alignment:
Q  79 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacactaa 144  Q
    ||||||||||||  | ||||| |||||||||||||||||| |||||| |||| |||||||||||||    
T  45660880 agaatcaattcttcacctcca-aatcaattttggcccctccagaagtggaacgaaacatacactaa 45660944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 28287384 - 28287423
Alignment:
Q  2 aatcaaaagctacaaatcctagcctcaagtagaaccaatt 41  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  28287384 aatcaaaagctacaaatccttgcttcaagtagaaccaatt 28287423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6021842 - 6021784
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    ||||||||||||||| |||||||| |||||||||| | ||| | ||||| |||||||||    
T  6021842 gaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaatcaatt 6021784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11049288 - 11049254
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11049288 gaatcaaaagctacaaatcctagcttcaagtagaa 11049254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 31362354 - 31362403
Alignment:
Q  101 aatcaattttggcccctctagaagtagaaccaaacatacactaaccatgt 150  Q
    |||||| |||| ||| ||||||||||||||||| |||||||||| |||||    
T  31362354 aatcaagtttgacccttctagaagtagaaccaagcatacactaaacatgt 31362403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 36780250 - 36780307
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacata 138  Q
    ||||||||||| | |||||||||||||| ||| ||||||| ||||| || ||||||||    
T  36780250 aatcaattctacacctccataatcaattatggtccctctaaaagtaaaatcaaacata 36780307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28083935 - 28083975
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaatt 41  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  28083935 gaatcaaaagctacaaattctagcttcaagtagaatcaatt 28083975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 16540144 - 16540085
Alignment:
Q  2 aatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatttt 61  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||| |  ||||||||||    
T  16540144 aatcaaaagctacaaatcctagcttcaagtagaatcaattttggagacagaatcaatttt 16540085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5724677 - 5724735
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    |||| ||||| ||||||||||||| |||||||||| ||||| ||||||| |||||||||    
T  5724677 gaataaaaagttacaaatcctagcttcaagtagaatcaattttggaggcaaaatcaatt 5724735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 5724761 - 5724823
Alignment:
Q  79 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacac 141  Q
    ||||||||||||| |  || | ||| ||||||||||||||||||||| |||||||||||||||    
T  5724761 agaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaacatacac 5724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4910946 - 4910888
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    ||||||||||||||||||| |||| |||||||||| ||||| | |||||  ||||||||    
T  4910946 gaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaatcaatt 4910888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7952756 - 7952809
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaat 54  Q
    ||||||||||||||||||||| || ||||||||||  |||| ||||||| ||||    
T  7952756 gaatcaaaagctacaaatcctcgcttcaagtagaataaattttggaggcaaaat 7952809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 765433 - 765473
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaatt 41  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  765433 gaatcaaaagctacaaatcatagcttcaagtagaatcaatt 765473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41386862 - 41386920
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatt 59  Q
    |||| ||||||||||||||||||| |||||||||| ||||| || ||| ||||||||||    
T  41386862 gaattaaaagctacaaatcctagcttcaagtagaatcaattctgaaggtgaaatcaatt 41386920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 40491534 - 40491472
Alignment:
Q  77 ttagaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatac 139  Q
    ||||||||||||||| | | ||||| |||||| || | ||||||||||| |||||||||||||    
T  40491534 ttagaatcaattctacaaccccatattcaattatgacacctctagaagtggaaccaaacatac 40491472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 15903580 - 15903637
Alignment:
Q  4 tcaaaagctacaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaatttt 61  Q
    ||||||||||||||||| | | ||||||| || ||||| ||||||| |||||||||||    
T  15903580 tcaaaagctacaaatcccaacttcaagtataatcaattttggaggcaaaatcaatttt 15903637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17111895 - 17111855
Alignment:
Q  1 gaatcaaaagctacaaatcctagcctcaagtagaaccaatt 41  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  17111895 gaatcaaaagctacaaatcatagcttcaagtagaatcaatt 17111855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 17378 - 17322
Alignment:
Q  81 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacat 137  Q
    ||||||||||| | ||||| ||||||||||||   |||||||||| |||||||||||    
T  17378 aatcaattctacacctccagaatcaattttggttactctagaagtggaaccaaacat 17322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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