View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_11 (Length: 394)
Name: NF7139_low_11
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 19647651 - 19647998
Alignment:
| Q |
1 |
ggtagtgcaaatatcttagaagtgggtggaagaaaaaccatgatggattaattttatatcattgttgatcctcctccactgaaatttttcaatttaattt |
100 |
Q |
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| T |
19647651 |
ggtagtgcaaatatcttagaagtgggtggaagaaaaaccatgatggattaattttatatcattgttgatcctcctccactgaaaattttcaatttaattt |
19647750 |
T |
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| Q |
101 |
aacaaggtatggtttggtgtcaatctatatgattggaacccttcccttctccttggcactctttctttgtgtacttatgtcctaaaaagaagattctata |
200 |
Q |
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| T |
19647751 |
aacaaggtatggtttggtgtcaatctatatgattggaacccttcccttctccttggtactctttctttgtgtacttatgtcctaaaaagaagattctata |
19647850 |
T |
|
| Q |
201 |
attgcaatatgtaatgtatctatcttgaagtgggtctcacgttgtttttgctgtacagcttagattgcaatatttcaagggtaatgcttatcattggtct |
300 |
Q |
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| T |
19647851 |
attgcaatatgtaatgtatctatcttgaagtgggtctcacgttggttttgctgtacagcttagattgcaatatttcaagggtaatgcttatcattggtct |
19647950 |
T |
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| Q |
301 |
tacttctatctatctatttccacacgtcaacctttctacttcttatcctcaa |
352 |
Q |
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| T |
19647951 |
tact----tctatctatttccacacgtcaatgtttatacttcttatcctcaa |
19647998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 19660854 - 19660936
Alignment:
| Q |
19 |
gaagtgggtggaagaaaaaccatgatggattaattttatatcattgttgatcctcctccactgaaatttttcaatttaatttaa |
102 |
Q |
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| T |
19660854 |
gaagtgggtggaagaaaaaccatgatggactagttttatatcattgttgatcctcctccact-aaaatattcaatttaagttaa |
19660936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 19660940 - 19660979
Alignment:
| Q |
127 |
atatgattggaacccttcccttctccttggcactctttct |
166 |
Q |
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| T |
19660940 |
atatgattggaacccttcctttctccttggtactctttct |
19660979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 19661068 - 19661110
Alignment:
| Q |
317 |
tttccacacgtcaacctttctacttcttatcctcaaaatgatc |
359 |
Q |
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| T |
19661068 |
tttccaaacgtcaccctttctactttttatcctcaaaatgatc |
19661110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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