View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_12 (Length: 374)
Name: NF7139_low_12
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 45111073 - 45110700
Alignment:
| Q |
1 |
tgcatatccagagagtgcatgaatgagtgatttttgtttttcactgatcatttactgatgtatcta-tgtgctagtaatttgaaatcaacggcagttata |
99 |
Q |
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| T |
45111073 |
tgcatatccagagagtgcatgaatgagtgatttttgtttttcactgatcatttactgatgcatctaatgtgcaagtaatttgaaatcaacggcagttata |
45110974 |
T |
|
| Q |
100 |
ttaaccacgtgtcaccaaagacaaaagttaggacacgtgtcatccattctctgttactgattctctgatgccctatgcatgaatgacgagccacggtttc |
199 |
Q |
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| T |
45110973 |
ttagccacgtgtcaccaaagacaaaagttaggacacgtgtcatccattctctgttactgattctctaatgccctatgcatgaatgacgagccacggtttc |
45110874 |
T |
|
| Q |
200 |
atttgacaatagaagatgaaactgaaactg------aaacagaaaaagaaaaagagcagtattaattaattttaccatgaatcagtaatttgcaactagt |
293 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45110873 |
atttgacaatagaagatgaaactgaaactgaaactgaaacagaaaaagaaaaagagcagtattaattaattttaccatgaatcagtaatttgcaactagt |
45110774 |
T |
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| Q |
294 |
atataaacactactcctcaacaagattgaaaaccacacacttcactccgcagctcttgtcttctacctttgctt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45110773 |
atataaacactactcctcaacaagattgaaaaccacacacttcactccgcagctcttgtcttctacttttgctt |
45110700 |
T |
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