View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7139_low_17 (Length: 342)
Name: NF7139_low_17
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 14664546 - 14664773
Alignment:
| Q |
18 |
aataataatcgcaaacaatagactaaagacgtctagtaacgaagtttggccaagtatcaaaccaaacaactaagatccttggaatttggaaaggagaggg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14664546 |
aataataatcgcaaacaatagactaaagacgtctagtaacgaagtttggccaagtatcaaaccaaacaactaagatccttggaatttggaaaggagaggg |
14664645 |
T |
|
| Q |
118 |
accgagtgatttctcttttttctcacaattccgatatttgttggttctctttctgatctgtacatgatgcaacatgcaactatcctcatctatctgctct |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14664646 |
actgagtgatttctcttttttctcacaattccgatatttgttggttctctttctgatctgtacatgatgcaacatgcaactatcctcatctatctg--ct |
14664743 |
T |
|
| Q |
218 |
gtgtttatcaaagtgacttgaaggttaatg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14664744 |
atgtttatcaaagtgacttgaaggttaatg |
14664773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 30735748 - 30735695
Alignment:
| Q |
194 |
caactatcctcatctatctgctctgtgtttatcaaagtgacttgaaggttaatg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30735748 |
caactatcctcatctatctgctctgtgtttatcaaagtgactcgaaggttaatg |
30735695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University