View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7139_low_18 (Length: 332)
Name: NF7139_low_18
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 2592375 - 2592637
Alignment:
| Q |
51 |
caaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592375 |
caaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
2592474 |
T |
|
| Q |
151 |
tagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
250 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592475 |
tagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
2592574 |
T |
|
| Q |
251 |
ggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2592575 |
ggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggccaagtgg |
2592637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 2623919 - 2624181
Alignment:
| Q |
51 |
caaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
150 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2623919 |
caaaaacaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaat |
2624018 |
T |
|
| Q |
151 |
tagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
250 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2624019 |
tagtccaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
2624118 |
T |
|
| Q |
251 |
ggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
313 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2624119 |
ggataagggaagtgttgttgagaatggaacacattcatccttgttgtctaaagggccaagtgg |
2624181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 2440429 - 2440691
Alignment:
| Q |
51 |
caaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440429 |
caaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
2440528 |
T |
|
| Q |
151 |
tagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
250 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2440529 |
tagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactattcaaaactgtgatttgattgctgtttt |
2440628 |
T |
|
| Q |
251 |
ggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
313 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2440629 |
ggataagggaattgttgttgagaaaggaacacattcatctttgttgtctaaagggccaagtgg |
2440691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 51 - 313
Target Start/End: Complemental strand, 2672270 - 2672008
Alignment:
| Q |
51 |
caaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2672270 |
caaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaat |
2672171 |
T |
|
| Q |
151 |
tagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
250 |
Q |
| |
|
|||| ||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
2672170 |
tagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtagcacataggttgagtactatacaaaattgcgatttgattgctgtttt |
2672071 |
T |
|
| Q |
251 |
ggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
313 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2672070 |
agacaagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggccaagtgg |
2672008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 51 - 299
Target Start/End: Complemental strand, 2596454 - 2596206
Alignment:
| Q |
51 |
caaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2596454 |
caaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
2596355 |
T |
|
| Q |
151 |
tagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
250 |
Q |
| |
|
|||| ||||| |||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
2596354 |
tagtccaagatactttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgattgctgtctt |
2596255 |
T |
|
| Q |
251 |
ggataagggaagtgttattgagaaaggaacacattcatctttgttatct |
299 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
2596254 |
ggataagggaattgttgttgagaaaggaacacattcgtctttgttatct |
2596206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 51 - 315
Target Start/End: Complemental strand, 2568895 - 2568631
Alignment:
| Q |
51 |
caaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2568895 |
caaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaat |
2568796 |
T |
|
| Q |
151 |
tagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
250 |
Q |
| |
|
|||| ||||| ||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
2568795 |
tagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgattgctgtttt |
2568696 |
T |
|
| Q |
251 |
ggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtggtg |
315 |
Q |
| |
|
||||||||| | |||| |||||||||||||||||||| ||| || || |||||||||||||||| |
|
|
| T |
2568695 |
ggataagggcattgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtg |
2568631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 2451151 - 2451413
Alignment:
| Q |
51 |
caaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
150 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2451151 |
caaaagcaaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagt |
2451250 |
T |
|
| Q |
151 |
tagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
250 |
Q |
| |
|
|||| ||||| ||||||||| ||| ||| ||||||| ||||| |||||||| || ||||||||||||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
2451251 |
tagtgcaagatgctttagaaagggttatgattggaagaacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatatgattgttgtttt |
2451350 |
T |
|
| Q |
251 |
ggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
313 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
2451351 |
ggataagggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtgg |
2451413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 51 - 295
Target Start/End: Complemental strand, 2641110 - 2640866
Alignment:
| Q |
51 |
caaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
150 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2641110 |
caaaaacaaaggattgcaatagctagagctatattgaagaatccaaaggtgttacttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
2641011 |
T |
|
| Q |
151 |
tagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
250 |
Q |
| |
|
|||| ||||| ||||||||| || ||||||||||||||||| || ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
2641010 |
tagtgcaagatgctttagaaagagttatggttggaaggacaagtgtagttgtcgcacataggttgagtactatacaaaattgtgatttgattgctgtttt |
2640911 |
T |
|
| Q |
251 |
ggataagggaagtgttattgagaaaggaacacattcatctttgtt |
295 |
Q |
| |
|
||||||||| | |||| |||| ||||||||||||||||||||||| |
|
|
| T |
2640910 |
ggataaggggattgttgttgaaaaaggaacacattcatctttgtt |
2640866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 17870307 - 17870107
Alignment:
| Q |
50 |
gcaaaatcaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaa |
149 |
Q |
| |
|
|||||| ||||| || |||||||||||||| || || ||||||||| | ||||||||| | ||||||||||||||||||||||||| | | ||||| || |
|
|
| T |
17870307 |
gcaaaaacaaaggatagcaatagctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgataataattcagaaaag |
17870208 |
T |
|
| Q |
150 |
ttagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgttt |
249 |
Q |
| |
|
|||| ||||| | || | ||||| |||||||||||||| || |||||||||||||||||||||||||| || || || |||||| | |||||||||| |
|
|
| T |
17870207 |
gtagtgcaagatgcattgaataaggtaatggttggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgttt |
17870108 |
T |
|
| Q |
250 |
t |
250 |
Q |
| |
|
| |
|
|
| T |
17870107 |
t |
17870107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University